Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04137 ATGGTGAAGGTGCGCATGAACACGGCCGATGTGGCCGCCGAGGTGAAATGCCTGCGTAGATTAATCGGAATGCGATGCTCCAATGTCTATGATCTCACTCCCAAGACCTACGTTTTCAAGCTCATGAACAGCAGCGGAGTCTCTGAATCCGGTGAGAGCGAGAAGGTTCTGCTGCTCATGGAAAGTGGCGTTAGATTGCATACTACTGTGTATATGCGTGACAAAAGCAACACTCCTTCTGGTTTTACCCTCAAATTGAGGAAACATATTCGGACTAGAAGGCTTGAGGATGTGCGCCAACTTGGGTACGATCGGATTATTCTCTTTCAATTTGGACTTGGGGAGAATGCAAATTATGTTATATTGGAGCTATATGCACAAGGGAACATCCTCCTCACGGATTCTAATTTTACTGTCATGACTCTACTTCGATCTCACAGGGATGATGATAAAGGGCTTGCAATCATGTCACGCCATCGTTATCCTACAGAAAGTTGTCGAATTTTTGAGCGAACTACTGCTGCAAAGCTGCAGACAGCCCTGATGTCTTCTAAGGAAGATGAAAGTAAGGAGACTGTTAAGGTCAATGGAAATGGAACTGATGCTTCTAATGTAGCAAGAGAGAAGCAGGGAGCCCGCAAAGGTGGGAAGTCATCTGCCACATTGAAAATTGTCCTTGGGGAAGCACTTGGTTATGGACCTGCACTTTCTGAACATATAATATTAGATGCTGGCTTAATCCCCAATGCAAAAATTCCCAAAGATAAAACGTGGGATGATGCCACTGTTCAGGCTTTAGTCCAAGCTGTAGCAAAGTTTGAAGATTGGATGCAGGATATTATTTCAGGTGAAATAGTTCCGGAAGGATACATTTTGATGCAGAACAAAAATTTGGGGAAGGATTCTTCCAAATCTCAACCAGAAAGTGTTAGCCAGATCTATGATGAGTTCTGCCCCATCTTACTCAACCAGTTTAAGTCAAGGGATTATACAAAGTTTGAGACATTTGATGCAGCCTTGGATGAGTTCTATAGTAAAATTGAGAGTCAAAGGGCTGAACAACAGCAGAAAGCCAAAGAAAATGCAGCTTCTCAGAAACTTAATAAGATACGCCAGGATCAGGAAAATCGAGTGCACACTTTGAGGAAAGAAGCTGATCACTGTGTTAAAATGGCAGAGTTGATAGAATACAACTTAGAAGACGTGGATGCTGCTATATTAGCTGTGCGTGTAGCCCTTGCCAAAGGTATGAACTGGGTTGACCTTGCTCGGATGGTGAAGGAAGAAAAGAAAGCTGGAAATCCAGTAGCTGGTCTCATTGACAAGCTCCATCTTGAGAGGAACTGCATGACTTTACTGTTAAGCAACAATCTTGATGAAATGGATGATGATGAGAAGACGCTCCCTGTGGATAAGGTTGAAGTTGATTTAGCTCTCTCAGCACATGCCAATGCTCGGAGGTGGTATGAACAGAAGAAAAAGCAGGAAAGCAAACAGGAGAAGACTATGACTGCCCATGAAAAGGCTTTCAAAGCTGCAGAGAGAAAGACTCGCCTACAGCTTAATCAGGAAAAAACTGTTGCCACAATTTCACATATTCGCAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGATTATCAGTGGACGTGATGCTCAGCAAAATGAGATGATAGTGAAGCGTTATATGTCAAAAGGAGATCTGTATGTGCATGCCGATCTGCATGGAGCTTCTAGTACAGTTATCAAGAATCACAAGCCTGAGCAACCAGTTCCTCCTCTGACCCTAAACCAAGCAGGATGTTTCACAGTTTGCCATAGCCAGGCATGGGACTCGAAAATTGTTACTAGTGCCTGGTGGGTTTATCCTCATCAGGTTAGTAAAACTGCTCCTACAGGGGAATATTTGACGGTAGGGAGTTTCATGATCCGGGGTAAGAAAAATTTTCTTCCACCACACCCTCTTATCATGGGTTTTGGCTTGCTATTTCGCTTGGATGAGAGTTCCTTAGGATCACATTTAAATGAAAGGAGAGTAAGAGGAGAGGAGGAAGCAATGGAAGATTATGTTGAAACTGGCCCTCTTGAAGAAATTTCTGATTCAGAGTCTGAGAAGGATGTCACTGATGGAAAATCTGCTGTACACTCAGAAAGGAATGGTAATTTATCTGCAGATTCGCACAAACCCTTTTCAGAAGACTTTATTGAAGACTCATCTCAAACTAGTTTGGCTACAATCAATGCCAACACTGCAGTTTCACATGATTTTCAAGCAAAAGAGACAAGTATGATGAATACAGTTGATGGGGAGAAATTATCCGACGTTAGTGGAAATGGCTTAGCATCTGTCACCCCTCAACTTGAGGAACTTATTGATCGAGCTCTGGGACTTGGATCTGTTGCTACATCAAGTAAAAGTTATGGAATCGAGAACTCTCAGATTGATTTAGGCAGTGAGGACCATTTTGAACAGAGCCAACCTGCAGTAAGAGATAAACCATATATATCAAAAGCTGAGAGAAGAAAGCTTAAAAAGGAACAGAAACATGGAGAAACACATTCAAATGTTGAACGTGGAAAGGATGAATCAAAACATAAAGATGTTTCTGCTAATCTACCTGCAAAAGAAGTTCAAAATTTGAAGACAGGTGGTGGTCAAAAAGTTAGCCGTGGACAGAAGGGCAAACTTAAGAAGATAAAGGAGAAGTATGCTGACCAGGATGAGGAAGAAAGGAGCATCCGAATGGCATTATTGGCTTCTTCTGGAAAATCAATCAAGAAGGAAGAGACATCATCTGGAAATGAAGCATCAGACAAAAAGCCTGGAAGTGGTCCTGCAGAAGCTCCAAAAATATGTTATAAGTGTAAGAAGGCAGGTCACTTATCTCGGGATTGTAAGGAGCAACCAGATGGTCTGTTGCATAGTAATGCAATCAGTGAGGCTGAAGAAAATCCCAACATGAGTGCAAACACTTCTCTTGCAGATAGGGTGACAATGGAAGAAGATGATATTCATGAAATTGGAGAAGAAGAGAAAGAAAAACTAAATGACGTGGATTACTTGACAGGGAACCCACTCCCCAATGACATTCTCTTATATGCTGTTCCCGTCTGTGGTCCATACAGTGCAGTCCAGTCTTACAAATATCGGGTGAAGATAATTCCTGGAACAGCGAAGAAAGGGAAAGCTGCAAAAACTGCAATGAACTTATTCAGCCACATGTCAGAAGCAACAAACCGGGAGAAGGAGTTGATGAAAGCCTGTACAGATCCTGAACTAGTTGCTGCGATTATTGGTAATGTTAAGATATCAGCAGCTGGCCTCACTCAATTGAAGCAAAAGCAAAAGAAAGGCAAGAAGAGCAGCAAAAAAGAAAGTTAG 3402 0.4209 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLTPKTYVFKLMNSSGVSESGESEKVLLLMESGVRLHTTVYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGENANYVILELYAQGNILLTDSNFTVMTLLRSHRDDDKGLAIMSRHRYPTESCRIFERTTAAKLQTALMSSKEDESKETVKVNGNGTDASNVAREKQGARKGGKSSATLKIVLGEALGYGPALSEHIILDAGLIPNAKIPKDKTWDDATVQALVQAVAKFEDWMQDIISGEIVPEGYILMQNKNLGKDSSKSQPESVSQIYDEFCPILLNQFKSRDYTKFETFDAALDEFYSKIESQRAEQQQKAKENAASQKLNKIRQDQENRVHTLRKEADHCVKMAELIEYNLEDVDAAILAVRVALAKGMNWVDLARMVKEEKKAGNPVAGLIDKLHLERNCMTLLLSNNLDEMDDDEKTLPVDKVEVDLALSAHANARRWYEQKKKQESKQEKTMTAHEKAFKAAERKTRLQLNQEKTVATISHIRKVHWFEKFNWFISSENYLIISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIKNHKPEQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEAMEDYVETGPLEEISDSESEKDVTDGKSAVHSERNGNLSADSHKPFSEDFIEDSSQTSLATINANTAVSHDFQAKETSMMNTVDGEKLSDVSGNGLASVTPQLEELIDRALGLGSVATSSKSYGIENSQIDLGSEDHFEQSQPAVRDKPYISKAERRKLKKEQKHGETHSNVERGKDESKHKDVSANLPAKEVQNLKTGGGQKVSRGQKGKLKKIKEKYADQDEEERSIRMALLASSGKSIKKEETSSGNEASDKKPGSGPAEAPKICYKCKKAGHLSRDCKEQPDGLLHSNAISEAEENPNMSANTSLADRVTMEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYSAVQSYKYRVKIIPGTAKKGKAAKTAMNLFSHMSEATNREKELMKACTDPELVAAIIGNVKISAAGLTQLKQKQKKGKKSSKKES. 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04137 1133 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 1 1109 - -
Seca6g04137 1133 MobiDBLite consensus disorder prediction 848 878 - -
Seca6g04137 1133 MobiDBLite consensus disorder prediction 986 1002 - -
Seca6g04137 1133 MobiDBLite consensus disorder prediction 187 214 - -
Seca6g04137 1133 Pfam NFACT N-terminal and middle domains 222 534 - -
Seca6g04137 1133 Pfam NFACT N-terminal and middle domains 10 183 - -
Seca6g04137 1133 MobiDBLite consensus disorder prediction 681 739 - -
Seca6g04137 1133 ProSiteProfiles Zinc finger CCHC-type profile. 959 974 IPR001878 GO:0003676|GO:0008270
Seca6g04137 1133 FunFam nuclear export mediator factor Nemf 6 163 - -
Seca6g04137 1133 MobiDBLite consensus disorder prediction 905 921 - -
Seca6g04137 1133 SMART c2hcfinal6 958 974 IPR001878 GO:0003676|GO:0008270
Seca6g04137 1133 Pfam NFACT protein C-terminal domain 1018 1111 IPR021846 -
Seca6g04137 1133 Gene3D - 953 1008 - -
Seca6g04137 1133 Pfam Zinc knuckle 958 974 IPR001878 GO:0003676|GO:0008270
Seca6g04137 1133 SUPERFAMILY Retrovirus zinc finger-like domains 942 978 IPR036875 GO:0003676|GO:0008270
Seca6g04137 1133 MobiDBLite consensus disorder prediction 984 1003 - -
Seca6g04137 1133 MobiDBLite consensus disorder prediction 705 720 - -
Seca6g04137 1133 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Seca6g04137 1133 MobiDBLite consensus disorder prediction 848 956 - -
Seca6g04137 1133 Coils Coil 364 384 - -
Seca6g04137 1133 Pfam NFACT protein RNA binding domain 541 652 IPR008532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04137 Seca-Chr6 109114616 109125647 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04137 K24971 - gmx:100807437 1923.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04137 6 109114616 109125647 Seca6g04137 6 109114616 109125647 ECH