Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04127 ATGAATTTTCTCATTGATATTGAATTGGGTTTTTTAACTTCCAATTTTCAGAAGACGGTTGAGGAAGATGGTGAGCTTCTCCCGGAGTTTGCAGATGCTGAAGAAAGACAACTCTATGAATCGCTGATGCTTGAAATGGAAAGTGATATGGACGTTGAACTATTGCGCCATTATGAGATTGTTTACTTAATTCATGAGAAGCATGAAGAAGAGGTTGCAGCTGTCAATGAGAAAATTCAAGACTTTTTGAGGGAGAAGAAAGGCAGGGTTTGGAGACTGAATGATTGGGGTATGAGAAGGCTGGCTTACAAAATAAAGAAAGCCAGCAATGCCCACTACATTTTGATGAACTTCGAGTTGGATGCCAAATATATAAACGAGTTCAAGACTCTGTTGGACAAAGATGAAAGAGTTATTCGGCATCTTGTGATAAAGATGGATGAGGCAATCACTGAAGATTGCCCTCCTCCTCCGGAGTTTCATACTCTGCGTGCAAATGCAGATGACGACGATGAAGATTATGATGATGATGATGATTGGGATGGTGAGGAAGAGGTGGATGGCGATGACGAGGATGATGGTGGGGAAGAAATTATTGTTATAGATGGTGACCAAGATGAGATGGAGTCTAGAAATGAGACATTGGCTAATGCTAACACAGCCAGATAG 669 0.4111 MNFLIDIELGFLTSNFQKTVEEDGELLPEFADAEERQLYESLMLEMESDMDVELLRHYEIVYLIHEKHEEEVAAVNEKIQDFLREKKGRVWRLNDWGMRRLAYKIKKASNAHYILMNFELDAKYINEFKTLLDKDERVIRHLVIKMDEAITEDCPPPPEFHTLRANADDDDEDYDDDDDWDGEEEVDGDDEDDGGEEIIVIDGDQDEMESRNETLANANTAR. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04127 222 Coils Coil 65 85 - -
Seca6g04127 222 ProSitePatterns Ribosomal protein S6 signature. 97 106 IPR020815 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca6g04127 222 MobiDBLite consensus disorder prediction 151 222 - -
Seca6g04127 222 Hamap 30S ribosomal protein S6 [rpsF]. 55 148 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca6g04127 222 SUPERFAMILY Ribosomal protein S6 55 155 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca6g04127 222 MobiDBLite consensus disorder prediction 169 203 - -
Seca6g04127 222 Gene3D - 51 153 IPR014717 -
Seca6g04127 222 FunFam 30S ribosomal protein S6 55 149 - -
Seca6g04127 222 CDD bS6 57 145 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca6g04127 222 NCBIfam 30S ribosomal protein S6 56 147 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca6g04127 222 Pfam Ribosomal protein S6 57 145 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca6g04127 222 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 47 166 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04127 Seca-Chr6 108938716 108942540 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04127 - - gmx:100790128 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04127 6 108938716 108942540 Seca6g04127 6 108938716 108942540 ECH