Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04100 ATGGCCACTGGACAACTATTCTCCCGTACTACACAAGCTTTGTTTTACAACTACAAGCAACTTCCCATCCAGCGGATGCTCGATTTTGACTTCCTTTGTGGCAGGGAAACACCATCAGTTGCTGGAATAATTAACCCTGGTTCTGAGGGATTTCAGAAACTCTTTTTTGGTCAGGAGGAAATTGCCATTCCAGTTCATTCTACCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAATTTTGCATCATTTAGAAGTGCTGCTGCATCATCCATTGCTGCTTTGAAGCAGCCAACAATTAGAGTTGTTGCTATTATTGCTGAAGGAGTACCTGAGTCAGACACCAAGCAATTGATTGCATATGCCCGGTCAAACAATAAGGTTGTAATTGGCCCAGCCACTGTTGGAGGCATTCAAGCTGGGGCTTTTAAAATTGGTGACACAGCTGGAACAATTGACAATATAATCCACTGCAAACTCTACAGACCTGGATCTGTCGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAGTTATACAACACCATTGCCCGTGTAACTGATGGGATTTATGAAGGCATTGCCATTGGAGGAGATGTTTTCCCAGGTTCCACACTTTCTGACCATGTTTTACGGTTTAACAACATACCACAGGTTAAGATGATAGTAGTACTTGGAGAACTTGGTGGGCGTGATGAGTATTCCTTAGTGGAAGCCCTAAAACAAGGGAAAGTGACGAAACCAGTCGTTGCCTGGGTTAGTGGAACCTGTGCACGGCTCTTCAAATCTGAAGTGCAATTTGGCCATGCTGGCGCTAAAAGTGGTGGTGAGATGGAGTCTGCTCAAGCAAAGAATCAGGCACTAAGGGAAGCTGGAGCTGTTGTTCCTACTTCATACGAAGCTTTTGAAGCTTCAATTAAAGAAACATTTGGCAAATTGGTTGAAGAAGGTAAGATCACACCAGTGAAGGAAATTACTCCTCCAGCAATCCCTGAGGACCTTAACTCTGCAATTAAGAGTGGAAAAGTCAGGGCTCCAACTCATATTATTTCCACCATTTCTGATGACAGAGGTGAGGAGCCATGCTATGCTGGTGTACCCATGTCTTCCATTATTGAAAAGGGTTATGGAGTTGGTGACGTTATCTCTCTATTGTGGTTTAAACGCAGCCTTCCTCGTTACTGTACTCAATTTATTGAGATGTGCATCATGTTATGTGCCGACCATGGTCCTTGTGTCTCTGGTGCTCACAATACTATCGTGACTGCAAGGGCTGGGAAGGACTTAGTTTCCAGTCTCGTGTCAGGTTTGCTTACAATCGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTACTTCAAGGATGCTCATGACAGGGGGCTTACACCTTATGAGTTTGTTGAAAGTATGAAGAAGAAGGGAATTCGTGTGCCAGGAATTGGGCACAGGATCAAGAATAGGGACAACAAAGATAAGAGAGTTGAGCTGCTACAGAAGTTTGCACGCACACATTTTCCTTCTGTGAAATACATGGAATATGCTGTTCAAGTTGAAACCTACACCCTCACTAAGGCAAATAATTTAGTTCTTAATGTAGATGGTGCAATTGGATCTCTTTTCTTGGATCTTCTTGCTGGTAGTGGAATGTTCACCAAGCAAGAGATTGATGAAATTGTGGAGATTGGCTATCTGAATGGGCTCTTTGTGCTGGCTCGCTCCATTGGTCTGATTGGGCACACCTTTGACCAGAAGAGATTGAAGCAACCGCTCTACCGTCACCCATGGGAGGATGTTCTCTACACAAAATGA 1827 0.4423 MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHSTIEAACAAHPTADVFINFASFRSAAASSIAALKQPTIRVVAIIAEGVPESDTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMIVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALREAGAVVPTSYEAFEASIKETFGKLVEEGKITPVKEITPPAIPEDLNSAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIEKGYGVGDVISLLWFKRSLPRYCTQFIEMCIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAHDRGLTPYEFVESMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVQVETYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK. 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04100 608 PRINTS Succinyl-CoA synthase signature 230 243 - -
Seca6g04100 608 PRINTS Succinyl-CoA synthase signature 199 217 - -
Seca6g04100 608 PRINTS Succinyl-CoA synthase signature 96 113 - -
Seca6g04100 608 PRINTS Succinyl-CoA synthase signature 266 283 - -
Seca6g04100 608 FunFam ATP-citrate synthase beta chain protein 2 137 - -
Seca6g04100 608 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 136 IPR036291 -
Seca6g04100 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 168 193 IPR017866 -
Seca6g04100 608 Pfam CoA-ligase 173 298 IPR005811 GO:0003824
Seca6g04100 608 Gene3D - 2 137 - -
Seca6g04100 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 259 275 IPR017440 -
Seca6g04100 608 Gene3D - 138 323 IPR016102 -
Seca6g04100 608 Pfam Citrate synthase, C-terminal domain 398 598 IPR002020 GO:0006099|GO:0046912
Seca6g04100 608 Gene3D - 451 552 IPR016143 -
Seca6g04100 608 Gene3D Citrate Synthase, domain 1 400 598 IPR016142 -
Seca6g04100 608 FunFam ATP-citrate synthase subunit 1 455 548 - -
Seca6g04100 608 FunFam ATP-citrate synthase subunit 138 323 - -
Seca6g04100 608 CDD CCL_ACL-C 369 606 - -
Seca6g04100 608 PANTHER ATP-CITRATE SYNTHASE 5 607 IPR002020 GO:0006099|GO:0046912
Seca6g04100 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 174 203 IPR033847 -
Seca6g04100 608 SUPERFAMILY Citrate synthase 130 604 IPR036969 GO:0046912
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04100 Seca-Chr6 108665970 108672708 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04100 1 608 Acyl Lipid Metabolism Gene Families AT3G06650 93.257 0.0 1148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04100 K01648 - gmx:100800904 1166.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04100 6 108665970 108672708 Seca6g04100 6 108665970 108672708 ECH
Seca12g00425 12 3673485 3679460 Seca6g04100 6 108665970 108672708 PCT