Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04089 ATGGCGGACAAGTACAACCTCAAGAACCCCGCCGTGAAGCGGATCCTCCAGGAGGTCAAGGAGATGCAGTCCAACCCTTCCGATGATTTCATGAGCCTCCCTTTCGAGGAAAATATATTCGAATGGCAATTTGCGATTAGAGGGCCTCGTGATACTGAATTTGAGGGCGGTATTTATCATGGAAGGATCCAGTTGCCTTCGGAGTATCCCTTAAAACCCCCCTCATTTATGCTCTTGACACCTAATGGTCGTTTCGAGACCCAAACCAAGATTTGCTTGAGCATATCAAATCACCATCCTGAGCATTGGCAACCTTCATGGAGTGTAAGAACTGCTTTAGTTGCAATGATTGCCTTCATGCCTACCAACCCAAATGGTGCATTGGGCTCATTAGACTACAAGAAAGAAGAGAGGCGTGCCTTGGCCATTAAATCTCGTGAGGCGCCTCCAAAATTTGGGACTCCTGAACGTCAAAAGCTAATTGATGAGATACATGAGTATATGCTAAGCAAGGCACCACCTGTTCCTCAACTTAGTCTCACACAGGCTCCTGAGGAGCAACCTAGAACAGAGGAGGCCGATGTCCAGGTTAATTCACCTAATCCTGAGGCTTTACCTGCAAGAGAGGGGATTCCAGATCAAGCTGGTGACAGAATTATTGAAGAACAAGAAGTCCCTGCAAATGCTAATCCTGCAGGAATTGAAGCTTCAAGGGAGATTCAATCAGTTTCAAGGAATCGGCTGCTCCAGAATTCAGATACGAGGGTTCAAAATCCGAGGCCAGAGACGAGGGTCCAAAAATCTGATGATCGGTTGTTTACATGGGCAGCTATTGGACTTACTATTGCAATTGTGGTCCTTTTACTGAAGAAGTTCATTAAATCTACGGAACATAATGCAGTATTTTTCAATGGATCTTAG 921 0.4549 MADKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPFEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPLKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAMIAFMPTNPNGALGSLDYKKEERRALAIKSREAPPKFGTPERQKLIDEIHEYMLSKAPPVPQLSLTQAPEEQPRTEEADVQVNSPNPEALPAREGIPDQAGDRIIEEQEVPANANPAGIEASREIQSVSRNRLLQNSDTRVQNPRPETRVQKSDDRLFTWAAIGLTIAIVVLLLKKFIKSTEHNAVFFNGS. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04089 306 CDD UBCc 12 151 IPR000608 -
Seca6g04089 306 MobiDBLite consensus disorder prediction 181 209 - -
Seca6g04089 306 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Seca6g04089 306 SUPERFAMILY UBC-like 11 133 IPR016135 -
Seca6g04089 306 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 10 130 - -
Seca6g04089 306 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Seca6g04089 306 Gene3D Ubiquitin Conjugating Enzyme 2 173 IPR016135 -
Seca6g04089 306 FunFam ubiquitin-conjugating enzyme E2 32 1 174 - -
Seca6g04089 306 SMART ubc_7 13 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04089 Seca-Chr6 108591476 108594756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04089 1 304 Miscellaneous Gene Families AT3G17000 63.023 1.10e-131 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04089 K10578 - gmx:100798396 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04089 6 108591476 108594756 Seca6g04089 6 108591476 108594756 ECH