Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04059 ATGGGTTATTATAGTTGGAAAGAGAGAAAAAGCTTATTGGGTATTGGGTTAGTGATTTGTGTGATGGTGGTTTTAGGGGAAGGGAGGGTGCCGTTTGCATGTGACCCAAAAAACGGTTTGACAAGGGGGTTAAAGTTTTGTAGGACAAACGTGCCAATCCACGTGAGGGTGCAAGACCTTATAGGGAGACTCACATTGGCTGAGAAGATAAGGTTAGTGGTGAACAATGCAATTGCGGTGCCAAGGTTGGGAATACAAGGGTATGAGTGGTGGTCAGAGGCGTTACACGGTGTTTCCAATGTGGGGCCAGGAACCAAGTTCGGTGGGGCTTTCCCCGCCGCAACTAGCTTCCCTCAGGTCATCACCACCGCTGCTTCCTTCAATCAGTCATTGTGGCACCAAATTGGACGGGTGGTGTCTGATGAAGCAAGAGCAATGTACAATGGTGGTGCTGCTGGCTTGACATATTGGAGTCCTAATGTGAACATTTTCCGTGACCCTCGGTGGGGCCGTGGCCAGGAAACTCCCGGCGAGGACCCCACTTTGGCCGGAAAATACGCCGCCAGCTATGTCCAGGGACTCCAAGGTGATGGTGCCGGTAACCGCCTTAAGGTTGCTGCTTGTTGTAAACACTACACCGCCTATGACCTTGATAACTGGAATGGTGTAGACAGGTTTCATTTCAATGCCAGGGGCTTTTTGGGAATACAGGTGAGCAAGCAGGACTTGGCGGATACATATGACGTACCCTTCAAAGCCTGCGTGTTGGAAGGGAAGGTGGCGAGTGTGATGTGTTCCTACAATCAGGTGAATGGCAAGCCCACGTGTGCTGATCCTGAACTTCTTCGCAACACCATCCGTGGCCAATGGCGCCTCAATGGGTACATAGTATCGGACTGTGACTCAGTTGGAGTTTTCTATGACAACCAACACTACACAAGAACACCCGAAGAGGCAGCTGCAGAAGCAATTAAAGCAGGCCTGGATTTGGATTGTGGGCCGTTCTTAGCCCTCCACACTGATGCTGCCATTAAGCAAGGGCTCATTTCTGAAAACGATCTTAACCTTGCCTTAGCCAACCTTATTACGGTCCAAATGAGATTGGGTATGTTCGATGGCGAACCATCGGCCCAACCATACGGAAACTTGGGCCCGAGAGATGTATGCACTCCAGCCCATCAACAACTGGCCCTTGAGGCAGCTAGACAGGGCATTGTCTTGCTACAAAACAAAGGAAACGCCTTGCCACTATCTCCTACTCGACACCGCACCGTAGGAGTCATTGGGCCCAATTCAGACGTTACTGTTACAATGATAGGGAACTATGCTGGTGTGGCATGTGGTTATACAACGCCTTTGCAAGGAATTGCGAGATATGTGAAAACCGTTCATCAAGCTGGATGTAGGGACGTGGCTTGTGGTGGAAACCAACTATTTGGAGCAGCAGAGATCGTAGCTAGGCAGGTTGATGCAACGGTGTTAGTAGTGGGCCTTGACCAGTCCATAGAAGCTGAATTCAGAGACAGGGTTGGGCTTCTCTTACCAGGCCATCAACAAGAGCTTGTGTCCAGAGTAGCCAGGGCCGCCAGAGGCCCAGTTGTCTTGGTCATCATGTCTGGTGGCCCGGTTGATGTCACATTTGCCAAAGATGACCCCAAGATTAGTGCCATTTTGTGGGTTGGTTATCCTGGTCAAGCTGGGGGAACTGCCATTGCTGATGTCATCTTTGGCACAACCAACCCAGGAGGAAGGCTACCCATGACATGGTATCCACAATCCTATGTGGATAAATTGCCCATGACAAACATGGATATGCGTCCAAACCCAGCAACTGGGTACCCGGGAAGAACCTACAGATTCTACAAGGGCCCAGTAGTATTTCCTTTTGGGCATGGGCTGAGTTACACTAGATTCACCCACAGCTTAGCAATTGCTCCCAAACAGGTCTCAGTGCCCTTTGCAAGGCTCCAAGGCTTAACAAACTCAACCTTGTCAAGCAAAGCTGTGAGGGTGAGTCATGCTAAATGTGGTGCATTGGAGGTGGAGTTTCATGTTGATGTAAAAAATGAAGGTTCAATGGATGGGACTCATACCCTTCTCATTTTCTCTCAGCCACCACCTGGAAAATATTCTGCAGTTAAACAATTGGTGAGCTTCCACAAGACCTATGTTCCTGCTGGTTCAAAGCAGCGTATTAAGGTTGGTGTTCATGTATGCAAGCACCTATCCGTTGTGGATGAGTTTGGGATTCGAAGAATCCCAATGGGTGAACATGAACTCCATATTGGTGATGTCAAACATTCAATTTCTGTTCAGACTATGGAAGAAATTAAACACTAG 2340 0.4902 MGYYSWKERKSLLGIGLVICVMVVLGEGRVPFACDPKNGLTRGLKFCRTNVPIHVRVQDLIGRLTLAEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPAATSFPQVITTAASFNQSLWHQIGRVVSDEARAMYNGGAAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAGKYAASYVQGLQGDGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNARGFLGIQVSKQDLADTYDVPFKACVLEGKVASVMCSYNQVNGKPTCADPELLRNTIRGQWRLNGYIVSDCDSVGVFYDNQHYTRTPEEAAAEAIKAGLDLDCGPFLALHTDAAIKQGLISENDLNLALANLITVQMRLGMFDGEPSAQPYGNLGPRDVCTPAHQQLALEAARQGIVLLQNKGNALPLSPTRHRTVGVIGPNSDVTVTMIGNYAGVACGYTTPLQGIARYVKTVHQAGCRDVACGGNQLFGAAEIVARQVDATVLVVGLDQSIEAEFRDRVGLLLPGHQQELVSRVARAARGPVVLVIMSGGPVDVTFAKDDPKISAILWVGYPGQAGGTAIADVIFGTTNPGGRLPMTWYPQSYVDKLPMTNMDMRPNPATGYPGRTYRFYKGPVVFPFGHGLSYTRFTHSLAIAPKQVSVPFARLQGLTNSTLSSKAVRVSHAKCGALEVEFHVDVKNEGSMDGTHTLLIFSQPPPGKYSAVKQLVSFHKTYVPAGSKQRIKVGVHVCKHLSVVDEFGIRRIPMGEHELHIGDVKHSISVQTMEEIKH. 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04059 779 Pfam Fibronectin type III-like domain 702 764 IPR026891 -
Seca6g04059 779 SUPERFAMILY (Trans)glycosidases 45 404 IPR017853 -
Seca6g04059 779 SMART Fn3_like_2 697 766 IPR026891 -
Seca6g04059 779 FunFam probable beta-D-xylosidase 7 56 377 - -
Seca6g04059 779 Pfam Glycosyl hydrolase family 3 N terminal domain 111 360 IPR001764 GO:0004553|GO:0005975
Seca6g04059 779 PANTHER SUGAR HYDROLASE-RELATED 29 769 IPR044993 GO:0009044|GO:0045493
Seca6g04059 779 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 405 638 IPR036881 GO:0004553|GO:0005975
Seca6g04059 779 Pfam Glycosyl hydrolase family 3 C-terminal domain 405 635 IPR002772 GO:0004553|GO:0005975
Seca6g04059 779 FunFam probable beta-D-xylosidase 2 390 636 - -
Seca6g04059 779 Gene3D - 56 379 IPR036962 GO:0004553|GO:0005975
Seca6g04059 779 Gene3D - 391 636 IPR036881 GO:0004553|GO:0005975
Seca6g04059 779 Gene3D Immunoglobulins 659 779 IPR013783 -
Seca6g04059 779 PRINTS Glycosyl hydrolase family 3 signature 117 136 IPR001764 GO:0004553|GO:0005975
Seca6g04059 779 PRINTS Glycosyl hydrolase family 3 signature 285 303 IPR001764 GO:0004553|GO:0005975
Seca6g04059 779 PRINTS Glycosyl hydrolase family 3 signature 205 221 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04059 Seca-Chr6 108317225 108323797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04059 17 772 Glycoside Hydrolase AT5G49360 72.644 0.0 1136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04059 - - gmx:100812823 1372.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04059 6 108317225 108323797 Seca6g04059 6 108317225 108323797 ECH