Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04022 ATGGCACCTCAAGCAGAGTTTGCCAAGATTGGCTATGAAATTGAAAAGCTGTTTGGCCGGCAGAAGAGTTTTGGTAATGCTAACTCTCCAGCTTCTCACCAAAATCTCTGTCAATACAAATTTTATCCAACCTATGGGGCTACCAAGGTAGTCCACATGAACGTTGAAGACCTCAAATGCAATGAAGCTGCTTCCAGATTCATTGCAGAAAACAGAAAAGACCTGCACTTGAAAGTGGCTTATTGTGTGGATGCTGCTGGTAAAAGAAAAATGCCAGTTGCTGGTCCTGATATCTACAGAGGTAAAAATGTAGCTAAGGATGAACTTGTTCCTGGCGAGAAAATAGTTAACGTCATGAGCTTTGAAGCCAAACCTGATGGCAAATTTGACTCCACTCAGGGTTTCATGGATGCGTGGAGAGAAGCCTGCCATTCTAAAGAGCAGGCCAGGCTTCTGATCCCTGAAGGCAGGTTCCTTGTTTCGACAATGTATTTTGCTGGGCCATGCTCCACTCCAGGGCCCATAACAATCCAAGTTGTAGGCACTGTTGTAGCTACAACAGATATCAGTGAGTATGTGAATGGCGAATGGCTCATGTTTGAGGACATCAATGGCCTAAAACTAATTGGTGGAGGTACTTTTGATGGGCAGGGTAAGGCTTCATGGGCTGAAACTGAGAACTGTGAAACAGACCCAGGTAGCACATGTGTCAGGGCCCCTAGCAGCCTTTATTTCAGCAAAGTTACCAATGGACTTATACAGAACATCAGATCCGTTGACTCCAAAGGCTTTCATGTATTTGTCACTAACTCTGCAAATATTAGACTTAGATTACTTAAGATCAGTGCACCAGGTACCAGCCCCAACACTGATGGCATTCATTTGAGCCACTCCGTTAATGTAAAAGTATCCAAATGTAACGTTGAAACTGGGGATGATTGTGTCTCCATGATACAAGGACTCAACAATGTTACCATCAACAGATTGAAATGCGGTCCTGGACATGGTATTAGTATTGGAAGTCTTGGAAAGTATAAAGATGAGCAAGAGGTGAAAGGCATTCGTGTCCGGAACTGCACATTGGTTGGCACAACCAATGGCCTAAGAATCAAAACATGGCCAGATAAGTATACAGGAGCAGCATCAGATATCACCTTCAGTGACATTACCATGGAAAATGTTAAAAATCCTATCATCATTGATCAAGAGTATCAATGCTCTCCAAACTGCAAAAAGAAGCCTTCACTTGTAAAGATCAGTAATGTCCATATTTCAAATATAAGGGGAAGTACAATTTCACCAATTGCAGTGGATTTAAGGTGCAGCAAGCTGTACCCATGCCAGAATGTTAAACTTCACAACATAGACCTGAGGCTTGGACCCAACCCTGGTGGCTCTAGATGTGCCAACATTAAACCTATTTATAGCGGCTTGCAAAGACCACCTGCTTGCCCATAG 1458 0.4321 MAPQAEFAKIGYEIEKLFGRQKSFGNANSPASHQNLCQYKFYPTYGATKVVHMNVEDLKCNEAASRFIAENRKDLHLKVAYCVDAAGKRKMPVAGPDIYRGKNVAKDELVPGEKIVNVMSFEAKPDGKFDSTQGFMDAWREACHSKEQARLLIPEGRFLVSTMYFAGPCSTPGPITIQVVGTVVATTDISEYVNGEWLMFEDINGLKLIGGGTFDGQGKASWAETENCETDPGSTCVRAPSSLYFSKVTNGLIQNIRSVDSKGFHVFVTNSANIRLRLLKISAPGTSPNTDGIHLSHSVNVKVSKCNVETGDDCVSMIQGLNNVTINRLKCGPGHGISIGSLGKYKDEQEVKGIRVRNCTLVGTTNGLRIKTWPDKYTGAASDITFSDITMENVKNPIIIDQEYQCSPNCKKKPSLVKISNVHISNIRGSTISPIAVDLRCSKLYPCQNVKLHNIDLRLGPNPGGSRCANIKPIYSGLQRPPACP. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04022 485 ProSitePatterns Polygalacturonase active site. 328 341 IPR000743 GO:0004650|GO:0005975
Seca6g04022 485 PANTHER - 114 470 - -
Seca6g04022 485 SMART pbh1 414 436 IPR006626 -
Seca6g04022 485 SMART pbh1 271 297 IPR006626 -
Seca6g04022 485 SMART pbh1 298 341 IPR006626 -
Seca6g04022 485 SMART pbh1 351 372 IPR006626 -
Seca6g04022 485 SMART pbh1 381 402 IPR006626 -
Seca6g04022 485 Pfam Glycosyl hydrolases family 28 143 472 IPR000743 GO:0004650|GO:0005975
Seca6g04022 485 Gene3D - 106 481 IPR012334 -
Seca6g04022 485 FunFam Pectin lyase-like superfamily protein 104 482 - -
Seca6g04022 485 SUPERFAMILY Pectin lyase-like 113 484 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04022 Seca-Chr6 107902905 107907598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04022 115 484 Glycoside Hydrolase AT4G18180 43.928 6.72e-105 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04022 K01213 - gmx:106796220 662.144