Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04000 ATGGAGGTGGAACCAGTAGAGCCACAGTCACTGAAGAAGCTGAGCTTCAAGTCCCTCAAGCGTGCCCTCGATCTCTTCTCTCCCATTCATGGACAACTTGCTCCTCCCGATGCCGAGAGCAAGAAAATACGCATTAATTACAAGGTAAATGCGGAGTATGGTGGAATCAAAAGCACCACTAGTCAACCTCCCCGTCAAGCTAATCCTGCTACACAGGATCACACTCAACAAGCCGGGCCCTCTAACACGCTTGCTCTTCCAGCTCCAGGAGATTCTAAGGATCCTCAGAAAGGAGGACCCCAAAATGCTTTGGTTGTTGGTCCAGCTATGCCATCCACAGCTCCGAATGATCATGGTTTTCCAAGCAAACATACAGCAGTTATTTCTGCTTCTGGTTCATCTGAAAGGAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGACCTGTATGGCATGCACCATGGAAGAACTATAGGGTCATCAGTGGTCACTTAGGATGGGTGAGATCTGTTGCAGTTGATCCCAGTAATACATGGTTTTGTACCGGTTCTGCAGATCGAACTATCAAGGTATATGATCACAAAATGCATGGCATAGCTGCTTGTTATAACTTATACAAAGGCATGGAGATATGGGACTTGGCAAGTGGAGTACTAAAACTCACATTAACAGGTCACATTGAACAAATAAGAGGTGAGATAGTAAGCAAACATACTTACATGTTCTCTGCTGGTGATGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGGTTATTAGGTCTTATCATGGTCATCTAAGTGGTGTTTATTGCTTGGCTCTTCATCCCACAATTGACATTTTACTGACCGGAGGACGTGACTCTGTCTGTCGGGTCTGGGATATTCGTAGTAAAATGCAAATTCATGCTCTCTCAGGTCATGATAACACTGTCTGCTCTGTGTTTACACGGCCAACAGATCCCCAAGTTGTTACTGGTTCTCATGACACTACCATCAAGATGTGGGACCTTAGATATGGTAAAACAATGTTAACTCTTACAAACCATAAGAAATCCGTTCGAGCAATGGCTCAACATCCTAAAGAGCAATCTTTTGCATCTGCATCAGCTGATAATATTAAAAAGTTCAACCTGCCAAAAGGAGAATTTGTGCACAATATGCTCTCTCAACAGAAAACTATCATCAACACAATGTCTGTCAATGAGGACGGTGTGATGGTTACTGGAGGTGACAATGGCAGTTTGTGGTTCTGGGATTGGAAGAGTGGTCACAATTTCCAGCAAGCCCAAACAATTGTACAACCTGGTTCACTGGACAGTGAAGCTGGTATTTATGCTTCAACCTACGATACTACGGGTTCAAGGCTTATAACCTGTGAAGCTGACAAGACAATAAAAATGTGGAAAGAAGATGAGTCTGCCACTCCAGAAACCCATCCCCTTAACTTCAGGCCTCCTAAAGACATCCGTCGATTCTAG 1500 0.4353 MEVEPVEPQSLKKLSFKSLKRALDLFSPIHGQLAPPDAESKKIRINYKVNAEYGGIKSTTSQPPRQANPATQDHTQQAGPSNTLALPAPGDSKDPQKGGPQNALVVGPAMPSTAPNDHGFPSKHTAVISASGSSERNLSTSALMERMPSKWPRPVWHAPWKNYRVISGHLGWVRSVAVDPSNTWFCTGSADRTIKVYDHKMHGIAACYNLYKGMEIWDLASGVLKLTLTGHIEQIRGEIVSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKMWDLRYGKTMLTLTNHKKSVRAMAQHPKEQSFASASADNIKKFNLPKGEFVHNMLSQQKTIINTMSVNEDGVMVTGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYASTYDTTGSRLITCEADKTIKMWKEDESATPETHPLNFRPPKDIRRF. 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04000 499 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Seca6g04000 499 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 304 - -
Seca6g04000 499 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 198 - -
Seca6g04000 499 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 345 - -
Seca6g04000 499 SMART WD40_4 159 198 IPR001680 GO:0005515
Seca6g04000 499 SMART WD40_4 262 301 IPR001680 GO:0005515
Seca6g04000 499 SMART WD40_4 387 426 IPR001680 GO:0005515
Seca6g04000 499 SMART WD40_4 438 476 IPR001680 GO:0005515
Seca6g04000 499 SMART WD40_4 221 259 IPR001680 GO:0005515
Seca6g04000 499 SMART WD40_4 304 343 IPR001680 GO:0005515
Seca6g04000 499 SMART WD40_4 346 384 IPR001680 GO:0005515
Seca6g04000 499 FunFam Putative pleiotropic regulator 1 208 499 - -
Seca6g04000 499 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Seca6g04000 499 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 352 IPR001680 GO:0005515
Seca6g04000 499 Pfam WD domain, G-beta repeat 264 301 IPR001680 GO:0005515
Seca6g04000 499 Pfam WD domain, G-beta repeat 308 343 IPR001680 GO:0005515
Seca6g04000 499 Pfam WD domain, G-beta repeat 226 259 IPR001680 GO:0005515
Seca6g04000 499 Pfam WD domain, G-beta repeat 161 198 IPR001680 GO:0005515
Seca6g04000 499 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 268 IPR001680 GO:0005515
Seca6g04000 499 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 9 499 IPR045241 GO:0000398
Seca6g04000 499 SUPERFAMILY WD40 repeat-like 156 478 IPR036322 GO:0005515
Seca6g04000 499 Gene3D - 145 499 IPR015943 GO:0005515
Seca6g04000 499 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 198 IPR001680 GO:0005515
Seca6g04000 499 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Seca6g04000 499 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Seca6g04000 499 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Seca6g04000 499 MobiDBLite consensus disorder prediction 478 499 - -
Seca6g04000 499 CDD WD40 162 476 - -
Seca6g04000 499 MobiDBLite consensus disorder prediction 55 132 - -
Seca6g04000 499 MobiDBLite consensus disorder prediction 55 83 - -
Seca6g04000 499 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04000 Seca-Chr6 107684124 107690444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04000 266 475 Miscellaneous Gene Families AT5G08390 29.630 6.64e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04000 K12862 - gmx:100775526 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04000 6 107684124 107690444 Seca6g04000 6 107684124 107690444 ECH