Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03999 ATGTTTCAACAACTTCTCTTTTCTCCCCCCTTAATTTTTTATATGAATACTCAGTATGAGAAGGTTCACCCACTTGATCATCAAGATGGGATGCATACAATGGAACAAGAGTCAAAACAATTCATGGATATTGCTAAATATGAAGGTCATGGGAAAGCCCTCAAACAATTGAATTCAGTTCAGTGTCACAGCAAAGAGCGCCCCAAAATTTCGAGCATCAAATGCCTCAAGGATATTTTGGAAGAACCTAAAACAGCAGCATCAGTAGTTTCATGCTATGAGGATTTTAGAGACAGAAGGGACCTGGAAAATATGGATGGCAGAAAATTTCATATAAGAACCACAATAACAAAAGCAGATGATCTACAACCAGAAACATATGACTGGAAGCTACATCAATACCCCGGTTTGCCTCAAGTTCCTCATAATCCAATGCAAGAACAGTTGGATGAAAGAAGCATAATTAAGGTTGATTCTAGCAGATTCACCAGGTCCATAGAAGATGTTGCTTTATCTATCTCCAAATACAGAGATAAAACCAGAAATACTCATTTAAATTGCCGTGTAGAGGATGAATTAATAGAGGAAGCACTGCAGCCCTTAAAATTCCATCTCTTTGATCATGCAACATTTACATCTACTTCCAAACATAGGCTCAGCCAGAAAAATCATGAAGAAAGTTCTAGGACAAAATTGCAAACATCATATAGCCTAGGAAACTTCAATGATGGCTGTTCAAACTCCAGAAGATATTCCCTGCATGACCTGGCAGGACTGACAGAAAGGAGAATTTCAGAACTACACTATTCAGAGGCATTAGGAAAAGGTGGTGAAAAATATACTGCAGACATTTCATCCATTTATGAGAGTTTGATTGGTTCATCAGACACTACTTATGCTTCCATAAAGGATGTGATTTTGGATGAACTGCTAATAGTTATCTCTACATCCAAAAAGGAAAGAGAACTAAGGGCATCAGTATCTATTCTGACAACAATAATTTCAAGGAACAAGTCAATTATAGAAGATGTCAAGAAGAAAGGTTTAAGGTTGTGTGATCTGGCAAGTGCTCTAAAACAAAATGTCCATGAGGCTGCAATTTTAATCTATTTAATAAATCCTTCCCCTATAGATATAAAAACATTGGAACTTCTGCCAATATTAGTGGAGATTGTATGCACTTCACATAGTTACAAGAGTAAGCCAGAGTCACTTCTTCTGACACCTCATGCAGCATCATTGATGATCATTGAAGAACTAGTAACTTCATTTGACTATGCAACCAATAACATGCATTTGGCCACAATCAGTTCCCCTCATGTTCTCAGTGGACTTCTAGAAGTTGCTAGAAATGATAATCTAGAAGAATTTTTCTCTTTGACAACCATCCTTATAAAATGCATGCAGTATGATGCACAGTGCAGAAAGTATGTGTCACAATTCACTCCTCTTGCTCCATTTATCCACCTTCTACAAACGGAAAACACCCGTGCCAAATGCATGGCACTTGACTTTTTTCATGAAATCCTTTGTATACCACGATCCTCAGCTATTAGTCTGCTGCAGCGTATACGGCAAGAAAGGAGCATCAATATCATGCAGATACTAATGCATTGTGCCCATGAATTACAACCTGATCACCAGCTTTTAGCAGCCAACTTATTGCTTCAGTTAGAAACATTGAACTCATCTGATAAAAGCTTGTTCAGAGAAGAAGCAGTGGAGATACTTCTCAGGGCAATGACATCTGAAGAAAGCTCAGAGCAGATATTATCAGCATCAATTCTATCAAATCTTGCTGGAACATATGCTTGGACAGGGGAACCATATACAGCTGCATGGTTGCTGAGAAAGGCTGGCTTGACCTCTCCCTATCACCAAAATATGATAAGAAACTTCAACTGGTTGGATCAGAGTCTACAGGATAACAGCACAGACTTATGGTGCAGTAAAATTGCCAAGTGTATCATAAGTGTTGGGGATTCCGTCTTCCATACTTTAGAGAGAGGGCTAAGAAGCAAGATGAAAAGGGTTTCTAGAGACTGCCTTGTATCCATTTCATGGCTTGGATGTCAAATATCAAAAAACCCAGACAGCCTCAGTTATTCTGCATCTGAGATTATACTAAGTGGAATTGAGCAATTTCTGCATCCTGGGATGGAGTTGGAAGAAAGACTTCTAGCATGTCTGTGCATGTTTAATTATGCCTCTGGGAAAGGTAAGCAAAAACTAATGCATTTCTCAGAAGGAGTAAAAGAATCACTGAGACGCCTTTCAAATGTAATTTGGGTGGCTGAGGAATTACACAGAGTAGCTGATTTCTTGCTGCCAAACATATCACGTATTTCATGTGTTCACACACAAATCCTTGAGGCAGGTCGCAACTTCAGCATAGCAGTTTGCTCCCTCATATATTACAAGGGACTGCTATTCAGTGGATATTCAGATGGATCAATCAAGGTCTGGGATATTAGGGGGCACTCAGCCAGTCTTGTATGGGACATTAAAGAACACAAAAAGTCTGTGACATGTTTTTCACTTTATGAACCATCAGACAGCCTTTTAAGTGGATCCACTGATAAAACCATAAGGGTATGGAAAATGATCCAAAGAAAGCTGGAATGTGTTGAAGTAATAGCCTTGAAGGAACCAATTCATCATTTACGCGCACATGGTGAAACAATTTTTGCAATTACTGAAAGCCAGGGATTAAAGCTTGTTAACGAATCAAGAATGATTAGAGATATTTTCAAAGGTAAACATGTTAAGTGCATGACAGTGGTTCAGGGAAAGTTATACATTGGATGCTCAGATTCAAGCATACAGGAGTATTCCACAACATACAACCGGGAACTAGAAATCAAACCACCAACAAGGAGTTGGAGGAAGCAAAGTAAGCCCATCAATTCAATTGTAGCATATAGAGATTGGCTCTATAGTGCAAGTAGGCATGTTGAAGGCACAACATTCAAGGAATGGAAAAGAACAAGGAAACCCAAAATTTCAATCCTTACTGAGAAAGGAGATAATGTGGTTGCCATGGAAGTGGTAGAAGACTTCTTATACCTAATATCCAGCTCATCAGCATACAGCATTCAGATCTGGTTGAGAGGGACGCCAAAAAAGTTGGGGAGAATATCAGCAGGAAGCAAGATAACAAGTATCCTTGCTGCCAATGACATTATACTTTGTGGTACTGAGACAGGACTAATCAAGGGCTGGATCCCTCTGTAG 3234 0.3915 MFQQLLFSPPLIFYMNTQYEKVHPLDHQDGMHTMEQESKQFMDIAKYEGHGKALKQLNSVQCHSKERPKISSIKCLKDILEEPKTAASVVSCYEDFRDRRDLENMDGRKFHIRTTITKADDLQPETYDWKLHQYPGLPQVPHNPMQEQLDERSIIKVDSSRFTRSIEDVALSISKYRDKTRNTHLNCRVEDELIEEALQPLKFHLFDHATFTSTSKHRLSQKNHEESSRTKLQTSYSLGNFNDGCSNSRRYSLHDLAGLTERRISELHYSEALGKGGEKYTADISSIYESLIGSSDTTYASIKDVILDELLIVISTSKKERELRASVSILTTIISRNKSIIEDVKKKGLRLCDLASALKQNVHEAAILIYLINPSPIDIKTLELLPILVEIVCTSHSYKSKPESLLLTPHAASLMIIEELVTSFDYATNNMHLATISSPHVLSGLLEVARNDNLEEFFSLTTILIKCMQYDAQCRKYVSQFTPLAPFIHLLQTENTRAKCMALDFFHEILCIPRSSAISLLQRIRQERSINIMQILMHCAHELQPDHQLLAANLLLQLETLNSSDKSLFREEAVEILLRAMTSEESSEQILSASILSNLAGTYAWTGEPYTAAWLLRKAGLTSPYHQNMIRNFNWLDQSLQDNSTDLWCSKIAKCIISVGDSVFHTLERGLRSKMKRVSRDCLVSISWLGCQISKNPDSLSYSASEIILSGIEQFLHPGMELEERLLACLCMFNYASGKGKQKLMHFSEGVKESLRRLSNVIWVAEELHRVADFLLPNISRISCVHTQILEAGRNFSIAVCSLIYYKGLLFSGYSDGSIKVWDIRGHSASLVWDIKEHKKSVTCFSLYEPSDSLLSGSTDKTIRVWKMIQRKLECVEVIALKEPIHHLRAHGETIFAITESQGLKLVNESRMIRDIFKGKHVKCMTVVQGKLYIGCSDSSIQEYSTTYNRELEIKPPTRSWRKQSKPINSIVAYRDWLYSASRHVEGTTFKEWKRTRKPKISILTEKGDNVVAMEVVEDFLYLISSSSAYSIQIWLRGTPKKLGRISAGSKITSILAANDIILCGTETGLIKGWIPL. 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03999 1077 Gene3D - 773 1076 IPR015943 GO:0005515
Seca6g03999 1077 ProSiteProfiles Trp-Asp (WD) repeats profile. 835 868 IPR001680 GO:0005515
Seca6g03999 1077 PANTHER OS04G0584500 PROTEIN 52 776 - -
Seca6g03999 1077 SUPERFAMILY WD40 repeat-like 796 1073 IPR036322 GO:0005515
Seca6g03999 1077 Gene3D - 294 768 IPR011989 -
Seca6g03999 1077 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 835 868 - -
Seca6g03999 1077 SMART WD40_4 783 823 IPR001680 GO:0005515
Seca6g03999 1077 SMART WD40_4 828 867 IPR001680 GO:0005515
Seca6g03999 1077 SMART WD40_4 997 1036 IPR001680 GO:0005515
Seca6g03999 1077 SUPERFAMILY ARM repeat 372 762 IPR016024 -
Seca6g03999 1077 Pfam WD domain, G-beta repeat 833 867 IPR001680 GO:0005515
Seca6g03999 1077 ProSiteProfiles Trp-Asp (WD) repeats profile. 809 832 IPR001680 GO:0005515
Seca6g03999 1077 ProSitePatterns Trp-Asp (WD) repeats signature. 810 824 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03999 Seca-Chr6 107666768 107674624 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03999 - - gmx:100782870 1788.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03999 6 107666768 107674624 Seca6g03999 6 107666768 107674624 ECH