Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03990 ATGGGTGTTATGACTAGCAACCGAAAGCGCCCCGAAGGATGCATGAACCTTGTCAACCACACCACCAATTCTTCACCTTCAGATTCCCACAGAAAACGACTCAAATTCTCCCCCATGCCGACCCGACCCGCTTCAACCTCCAACGGCGTCGTTTCTAGGATTTCCCGGTACCCAGACGCGAAGCCACCGTTGGTTCGGGAGGTTCATGCGCCGTGCAGCAGGCCCCGCAGATTCCACCTTTCCAGAGCGCAATCGAAGACTAGTGCTAGTGCTAGCGACGACGACATGGGCAATTTGCTGGAGAGAACTTACCAGAAGGCTAAGTCTTCCGCATTGGCGACATGTAGGTTCTTGTTGCCGAAGGGCAAGGAGGTGATCGACGTGGACGTTGAGAGTATAGAGGTTTCGGAAGATTCAGGTGTGGAAGAGGTGGTTGAGGTTCATGATTTGGAGGCCAAGGTTGTCGAAGGCGGCGTTCAGCGGCGGTCAACGTCGTCGCCGGATTCTGCGTTGACCAATAACGGTAATAACTTGAAGGTGGTGAGTGCAGGGAAGACGTGGGGTTCTGAGGTGCATGAACATGATCTTTCGGATGTTCATGTGTACAAGAAGTTGCTTGAAGCTGCTCACAGGCGATCGGACACGCTTCAGAGGCTGCACTTTGAAATTGAACTGAACGAGAAGCGCAGGGACACGTTTAATTTGTTGCGTCCCAAGAAGGAATTAGTGGAGTATGGCTTTCAGGAAGTGTCGCGTGAGCCTTTTGTCCCGCTTACAAATGAGGAAGAAAATGAGGTTGAGCGTGCCTTTTCTGTCAATAGGAAGAAGATCTTGGTTACCCATGAGAATTCTAACATTGAGATCACGGGGGAAAAGTTCTGGTGCCTTGGCCCAGGGGCATGGTTAAATGATGAGGTGATAAATTTGTACCTTGAATTGCTGAAAGAGAGAGAGCAAAGAGAACCACAGAAGTTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAAAAGTTAATAAGTGGCAGGAATGGTTATGATTTCAAATCTGTCCGTAGATGGACGAGCCAGAGGAAATTGGGATATGGCCTATTTGAATGTGATAAAATATTTGTACCTATCCATAAAGAGATCCATTGGTGCTTGGCTGTTATCAATAAGAAAGATAAGAAATTCCAGTATCTTGACTCATTGAAAGGAAGGGATAACCATGTACTACACGTGCTGGCTAAATATTTTGTGGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATGTTAGTACTTGGGAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGGAAAATGGGTTTGTTTTCTGA 1344 0.4643 MGVMTSNRKRPEGCMNLVNHTTNSSPSDSHRKRLKFSPMPTRPASTSNGVVSRISRYPDAKPPLVREVHAPCSRPRRFHLSRAQSKTSASASDDDMGNLLERTYQKAKSSALATCRFLLPKGKEVIDVDVESIEVSEDSGVEEVVEVHDLEAKVVEGGVQRRSTSSPDSALTNNGNNLKVVSAGKTWGSEVHEHDLSDVHVYKKLLEAAHRRSDTLQRLHFEIELNEKRRDTFNLLRPKKELVEYGFQEVSREPFVPLTNEEENEVERAFSVNRKKILVTHENSNIEITGEKFWCLGPGAWLNDEVINLYLELLKEREQREPQKFLKCHFFNTFFYKKLISGRNGYDFKSVRRWTSQRKLGYGLFECDKIFVPIHKEIHWCLAVINKKDKKFQYLDSLKGRDNHVLHVLAKYFVDEVKDKTGKDIDVSTWEKEFVEDLPEQENGFVF. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03990 447 Pfam Ulp1 protease family, C-terminal catalytic domain 301 444 IPR003653 GO:0006508|GO:0008234
Seca6g03990 447 ProSiteProfiles Ubiquitin-like protease family profile. 286 447 IPR003653 GO:0006508|GO:0008234
Seca6g03990 447 MobiDBLite consensus disorder prediction 1 49 - -
Seca6g03990 447 MobiDBLite consensus disorder prediction 71 95 - -
Seca6g03990 447 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 135 444 - -
Seca6g03990 447 SUPERFAMILY Cysteine proteinases 254 444 IPR038765 -
Seca6g03990 447 Gene3D Adenoviral Proteinase; Chain A 245 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03990 Seca-Chr6 107592879 107599838 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03990 K08592 - gmx:100780703 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03990 6 107592879 107599838 Seca6g03990 6 107592879 107599838 ECH
Seca6g03990 6 107592879 107599838 Seca6g03990 6 107592879 107599838 PCT