Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03956 ATGGATGGTGCTGCTGCTTCCTCTACCAATGTCACAAAACAAGATTTGAACCGTTATGGGTATTTTGTCAACGAAATTCTCACCAAAGTTCATGAGCTTGAGAACCATGTGAGTGAGGTTGAGCAGTTCTACAATTCAACTGATGTTCAAGTTAATTCCAAAGACAAAGGCCGGGAGAAGCATCTTGCTGGCACTAAGAAGCCACTGCAAGGTTCATCAAGTAGGGAATCTACTGTTTCAGAAGAAATGCAAAAGCTCATGCGCCAGTTTTCCACAATGTTGCATGAGATAACTCAGCATAAATGGGCTTGGCCCTTCATGGAACCTGTAGATGTTGAAGGTCTTGAGCTGTATGACTATTATGAGGTTATTGATAAGCCTATGGATTTCAGTACAATAAAAAGAAAAATGGATGCTAGAGATGGCTCTGGTTATAAGAATGTGCGGGAGATATATTCTGATGTCAGGTTGATTTTTAAGAATGCAATGAAATACAACGATAAGAAACACGAGATCCATGTTATGGCCAAGGCCTTGCTGGAAAAATTTGAGAAGAAATGGCTGCAGCTTTTGCCTAAAGTTGATAAGGCGGAGAGAGGAATTTTAAAGGAAAAAGAAGCACATGTGCAGTTGGATACGCAGCTTGCTCAAGAAGCCACTTATGCCAATATGGCTAGAGAATTGAACTTTGCGCTGTGTGAGGTTGATATGGATTTGAAGAATCTCAAAGCAATGGTGATTGAAAAGTGCAGGAAACTGTCATCTCAAGAGAAAGTAGCACTTGGGGCAGCTCTGACCAAATTATCTCCTGAAAACCTCATGAAGGCATTACAGATAGTTTCTGAGAATAATCCAAGCTTCCAATCTGATGCTGAAGTGGTGAACCTTGACATTGATGCTCAGAGCGACTACACACTGTGGAGATTAAACATTTTTGTTAAAAGTGCACTAGAAAGTCAAGGAAGAACTACCAAGGGCACAATTGTTAACCATAATGATAACATTGAGGACAGGAGAAATAACACCAAAAGGAGGAGAGCTTTGTGA 1047 0.4059 MDGAAASSTNVTKQDLNRYGYFVNEILTKVHELENHVSEVEQFYNSTDVQVNSKDKGREKHLAGTKKPLQGSSSRESTVSEEMQKLMRQFSTMLHEITQHKWAWPFMEPVDVEGLELYDYYEVIDKPMDFSTIKRKMDARDGSGYKNVREIYSDVRLIFKNAMKYNDKKHEIHVMAKALLEKFEKKWLQLLPKVDKAERGILKEKEAHVQLDTQLAQEATYANMARELNFALCEVDMDLKNLKAMVIEKCRKLSSQEKVALGAALTKLSPENLMKALQIVSENNPSFQSDAEVVNLDIDAQSDYTLWRLNIFVKSALESQGRTTKGTIVNHNDNIEDRRNNTKRRRAL. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03956 348 SUPERFAMILY Bromodomain 74 195 IPR036427 GO:0005515
Seca6g03956 348 PRINTS Bromodomain signature 117 133 IPR001487 GO:0005515
Seca6g03956 348 PRINTS Bromodomain signature 154 173 IPR001487 GO:0005515
Seca6g03956 348 PRINTS Bromodomain signature 101 114 IPR001487 GO:0005515
Seca6g03956 348 ProSiteProfiles Bromodomain profile. 98 173 IPR001487 GO:0005515
Seca6g03956 348 ProSiteProfiles NET domain profile. 243 324 IPR027353 -
Seca6g03956 348 PANTHER OSJNBA0053K19.4 PROTEIN 7 318 - -
Seca6g03956 348 Pfam Bromodomain extra-terminal - transcription regulation 253 315 IPR027353 -
Seca6g03956 348 MobiDBLite consensus disorder prediction 51 77 - -
Seca6g03956 348 SMART bromo_6 79 192 IPR001487 GO:0005515
Seca6g03956 348 Gene3D - 247 323 IPR038336 -
Seca6g03956 348 MobiDBLite consensus disorder prediction 331 348 - -
Seca6g03956 348 MobiDBLite consensus disorder prediction 325 348 - -
Seca6g03956 348 Gene3D - 46 212 IPR036427 GO:0005515
Seca6g03956 348 Pfam Bromodomain 91 177 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03956 Seca-Chr6 107271373 107276732 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03956 - - lja:Lj0g3v0059669.1 466.848