Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03944 ATGCCTTCTCGATCTCATTCTCATTCTGGTGCCTTAATTCCCCAAGTTACCCTCACAGCTATCTTGTATTTACTGCTTCTGTCCCCACGGCCATCCCTCTCCATTAACATCACCGCCCTCCTTTCCACCTTCCCTGACTTTTCCCAATTCACCGCCCTCCTCTCCGCCGCCACTCCCCTCGCCGGCGACCTCTCCCACCGGACCTCCCTTTCCCTCCTTGCCGTCCCTAACTCCTTCCTCTCCTCCGACGACCACATCGCCCGCCACCAACTATCCCCCTCCGCCCTCGCCGACGTCCTCCGCTACCATGTCCTCCTCCAATTCCTCTCCTGGTCTGACCTCCGCTCCCTCCCTCCCTCCGGCAAGCTCGTCACTACTCTCCTCCAAACCACCGGCCGCGCCACCGACAACTTCGGCTCCGTCAACATCACCCGCGACCCCAAATCCGGCGTCGTTTCGATCCGCTCCCCTGCGCCCTATTCCCCTTCCAATGCAACCGTTTTGGCACTCGTCAAAACCCTACCCTACAACGTCACCATCTTCTCCGTCAATTCACTCTTAATCCCCTACGGCTTCGATCTCATGGCCTCCGAGACGCGCCCTAGCATCGTCCTCAACATCACTAAGGCCTTAATTGACGGCCACAACTTCAACGTTGCGGCATCCATGCTCTCTGCTTCTGGCGTGGTTCAAGAGTTCGAGGCGGACGAAGGCGGCGCTGGAATCACCATGTTCGTCCCCGTCGACGATGCCTTCGCCGATCTCCCACCCTCCGTGACCCTCCAGTCCCTTCCGGCGGACAAGAAGGCCGTTGTACTCAAATTCCACGTTCTCCATTCGTATTACCCTCTCGGTTCTCTCGAGTCCGTGGTGAACCCCTGCCAGCCCACGCTTGCTACCGAGGACATGGGCGCTGGAAGCTTCACCCTCAACATTTCAAAGGTTAATGGCTCAGTCGCCCTCAGCACTGGCATCGTTCAAGCCTCTGTTACTCAGACTGTGTTTGATCAGAACCCCGTCGCTATTTTCGGCGTTTCCAAGGTCTTGCTGCCACGGGAGATTTTCGGGAGGAATCCAATTGTGTCTGCAAAGCCTCAGGACAGCGGTGCTCCTCCACCCGACGATAATGAGCTTTCGCCGGAGACTTCACCAGGATTCGACGGCCACCTATCTTCCCCGCCGGGGTTTCGGGAAGATCAGCGCTCTCAAGCTGCTGGTTTTGGTTCCGAGTTGTTTGTTGTTTTTATTTGCTGTATAGGATTGTATTTAGTGGTATAA 1278 0.5673 MPSRSHSHSGALIPQVTLTAILYLLLLSPRPSLSINITALLSTFPDFSQFTALLSAATPLAGDLSHRTSLSLLAVPNSFLSSDDHIARHQLSPSALADVLRYHVLLQFLSWSDLRSLPPSGKLVTTLLQTTGRATDNFGSVNITRDPKSGVVSIRSPAPYSPSNATVLALVKTLPYNVTIFSVNSLLIPYGFDLMASETRPSIVLNITKALIDGHNFNVAASMLSASGVVQEFEADEGGAGITMFVPVDDAFADLPPSVTLQSLPADKKAVVLKFHVLHSYYPLGSLESVVNPCQPTLATEDMGAGSFTLNISKVNGSVALSTGIVQASVTQTVFDQNPVAIFGVSKVLLPREIFGRNPIVSAKPQDSGAPPPDDNELSPETSPGFDGHLSSPPGFREDQRSQAAGFGSELFVVFICCIGLYLVV. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03944 425 SUPERFAMILY FAS1 domain 211 351 IPR036378 -
Seca6g03944 425 SUPERFAMILY FAS1 domain 34 190 IPR036378 -
Seca6g03944 425 Gene3D FAS1 domain 29 189 IPR036378 -
Seca6g03944 425 Gene3D FAS1 domain 196 352 IPR036378 -
Seca6g03944 425 SMART fasc_3 243 352 IPR000782 -
Seca6g03944 425 MobiDBLite consensus disorder prediction 360 400 - -
Seca6g03944 425 ProSiteProfiles FAS1/BIgH3 domain profile. 34 187 IPR000782 -
Seca6g03944 425 FunFam fasciclin-like arabinogalactan protein 4 34 189 - -
Seca6g03944 425 Pfam Fasciclin domain 216 351 IPR000782 -
Seca6g03944 425 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 401 IPR033254 -
Seca6g03944 425 ProSiteProfiles FAS1/BIgH3 domain profile. 204 349 IPR000782 -
Seca6g03944 425 FunFam Fasciclin-like arabinogalactan protein 4 205 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03944 Seca-Chr6 107152063 107153340 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03944 - - pvu:PHAVU_009G244800g 674.085