Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03938 ATGGATGGTGGGGCAACGTGGATGCCAGATTGTGTGAGGAATTATGTTAAAGGGAAAACAGATAAACATAATGACATGCCACAACCGGTTGTCAGACCTAATGGAGGTTCACTGCTTATGTCCTCCAGAATATCTTGTTTAAGATTGAGTCCAAAGTTCTCTTCTCATGCTGTGAATGATGGTCCTGTTCCTGGACATGCATTATTGACTACTTTAGGATCAGAGTCATCAGGTGGATCAATTTATACTCTCGGTTTTGTTGAACCATTAGATCTTGGACCAGGTATACTCGGCACATGGAGCAGACTAGAGGAAGTTGCTTCTTTCAGGTGTACCCTATGGACAGCAGAATATGATTATAATAGACATCAGGCTATAATTGGTACTAATTTAGGAGGTGCTTCAGTGGATTTGGAAACTGGGGCGACATCATGGTTTTTACGTTGTAAAAGTGATGTTTTTGCACAACAGATTGTTAATTCGGGAAATGAGGTTTTATGTGGACTCAGAAATGGGGCAATTGTCACTGTAGATTTTCGTGAGAGAAGAGGCAGGCTTTCTGGTAGACGTACACACAGGATATCTTATACATCTCCAATCAAGAAAGTTGGAAGTTCTGATAAAGAATGGTTCAAGCTCACTGGAAACATATATCCTTCTCATACCATTAGGATGCCTTCATCGATATCCTGCTTGGTGTCACTTCAGTTTGATGAGCAGTACTTCTTGGCAAGCTCCTTGGATGGATCGATGAGGCTCTATGATCGTCGCCTACTCCAGAGGGGTTCTGTTCAATCTTATGAAGGGCATGTGAATTCCCATACTCATATACAGCTTGGTGTTGATCCATCTGAGAGATTTGTTATGTCAGGTGGAGAGGATTGCAAGCTAAGGTTATGGAGTATCAAGTCTGGCGAGCTGCTTTTGGAGGATAAGTTCTCTGATTCAGTTCTCTCCACTATGTGCTATCAAACAAGTGGAAGTAGTTTTAAACCTCCGAAAGAAAACCAATACAAGCATGACTCTCCTCTGGGTGCGTGGCTTGGATCACGTGAAGGACTGTTTTATATGCAATGGTTATGA 1083 0.4211 MDGGATWMPDCVRNYVKGKTDKHNDMPQPVVRPNGGSLLMSSRISCLRLSPKFSSHAVNDGPVPGHALLTTLGSESSGGSIYTLGFVEPLDLGPGILGTWSRLEEVASFRCTLWTAEYDYNRHQAIIGTNLGGASVDLETGATSWFLRCKSDVFAQQIVNSGNEVLCGLRNGAIVTVDFRERRGRLSGRRTHRISYTSPIKKVGSSDKEWFKLTGNIYPSHTIRMPSSISCLVSLQFDEQYFLASSLDGSMRLYDRRLLQRGSVQSYEGHVNSHTHIQLGVDPSERFVMSGGEDCKLRLWSIKSGELLLEDKFSDSVLSTMCYQTSGSSFKPPKENQYKHDSPLGAWLGSREGLFYMQWL. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03938 360 SMART WD40_4 260 301 IPR001680 GO:0005515
Seca6g03938 360 SMART WD40_4 216 255 IPR001680 GO:0005515
Seca6g03938 360 Pfam WD domain, G-beta repeat 264 301 IPR001680 GO:0005515
Seca6g03938 360 PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED 10 359 - -
Seca6g03938 360 Gene3D - 136 330 IPR015943 GO:0005515
Seca6g03938 360 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 310 IPR001680 GO:0005515
Seca6g03938 360 SUPERFAMILY WD40 repeat-like 137 322 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03938 Seca-Chr6 107091511 107099061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03938 230 324 Miscellaneous Gene Families AT5G08390 27.835 5.42e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03938 K11799 - gmx:100798753 573.933