Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03848 ATGGCTGTTTCCATGAGAGATTTGGATGCAGCTTTCCAGGGAGCTGGACAAAAGGCTGGACTTGAAATATGGCGTATTGAAAATTTTAATCCTGTCCCTGTCCCAAAGTCCTCTTATGGCAAGTTTTTCACTGGGGACTCCTATGTGATCTTAAAGACAACCGCATCAAAAAGTGGTGCTCTGCGCCATGACATCCATTACTGGCTCGGTAAAGACACCAGTCAGGATGAAGCAGGTGCCGCAGCCATCAAGACAGTTGAGCTGGATGCAGCTCTTGGAGGACGTGCCGTTCAGTATCGTGAAGTACAGGGCCATGAAACTGAAAAGTTCCTCTCTTATTTCAAACCGTGTATTATACCTCAAGAAGGTGGAGTTGCTTCTGGTTTTAAACACACTGAGGCTGAAAAACATAAGACACGGTTGTTTGTATGCAGAGGGAAACATGTTGTACATGTCAAAGAGGTTCCTTTTGCTCGATCTTCACTCAATCATGATGATATTTTTGTTCTCGATACTGAGTCAAAAATCTTCCAATTTAATGGTTCTAATTCATCCATTCAAGAAAGGGCTAAAGCTTTGGAAGTTGTTCAATATATTAAGGATACCTACCATGAGGGGAAATGTGAGGTAGCTGCTATTGAGGATGGAAAGTTGATGGCTGATCCTGAAACTGGGGAATTCTGGGGCTTCTTTGGGGGATTTGCTCCGCTTCCACGAAAAACAGCCAGTGATGATGATAAGCCTGCTGATTCTCGCCCTCCAAAACTGCTTTGTGTTGAAAAGGGACAGGTGGAACCTGTTGAAACTGATTCTTTGAAAAGGGAATTACTAGACACGAATAAGTGCTATATCCTGGATTGTGGGTTGGAAGTGTTTGTCTGGATGGGGAGAAGTACCTCTCTTGATGAAAGAAAAAGTGCAAGTGGAGCAGCTGATGAGTTAGTCAGTGGCATTGATCAACTGAAACCTCAAATAATTCGTGTTATTGAAGGATTTGAAACAGTGATGTTCAAGTCCAAGTTTGATTCTTGGCCTCAGACCCCTGATGTAACAGTATCTGAAGATGGTCGTGGCAAGGTTGCAGCACTTCTAAAACGTCAAGGAGTAAATGTCAAGGGTCTGTTGAAGGCTGATCCTGTAAAAGAAGAACCTCAACCCTACATTGATTGCACAGGACATTTGCAGGTTTGGCGTGTGAACGGTCAGGAAAAGATTCTTCTTTCAGCTTCTGATCAGTCAAAGTTTTATAGTGGAGATTGCTTCATTTTCCAGTATTCATATCCTGGAGAAGATAAGGAAGATTGTCTCATTGGGACGTGGATTGGAAAGAATAGTGTTGAGGAAGAACGAGCTTCAGCTAATTCACTAGCAAGCAAAATGGTTGAGTCAATGAAGTTCCTGGCTTCCCAGGCTCGTATATATGAAGGCAATGAACCGATTCAATTTCATTCTATCCTCCAAACGTTCATTGTTCTTAAGGGTGGACTTAGTGATGGATACAAGACATACATTGCAGAAAAGGAAATTCCAGATGAGACTTACAATGAAAACGGTGTTGCATTATTCCGCATCCAGGGCTCTGGACCAGACAATATGCAAGCTATACAAGTTGAGCCGGTTGCATCTTCCTTGAATTCCTCTTATTGCTACATACTTCATAATGGGCCTACTGTCTTTACTTGGTCTGGAAACTCTACAAGCACAGAGGACCAGGAACTTGTAGAGAGGATGCTGGATTTGATAAAGCCAAATTTACAATCCAAACCACAAAGGGAAGGTACAGAATCTGAACAATTTTGGGATTTGTTAGGAGGAAAATCAGAATATCCCAGTCAAAAGATTAGTAGGGAGGCTGAAAGTGATCCTCACCTATTTTCTTGCAACTTCTCGAAAGGTAAGGGATCATTTTCTTGCTTGCTGGAAATTTATCCGATTCCCCTTCCCCCTTTGAAGGCAAACAGCTGA 1965 0.4249 MAVSMRDLDAAFQGAGQKAGLEIWRIENFNPVPVPKSSYGKFFTGDSYVILKTTASKSGALRHDIHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVASGFKHTEAEKHKTRLFVCRGKHVVHVKEVPFARSSLNHDDIFVLDTESKIFQFNGSNSSIQERAKALEVVQYIKDTYHEGKCEVAAIEDGKLMADPETGEFWGFFGGFAPLPRKTASDDDKPADSRPPKLLCVEKGQVEPVETDSLKRELLDTNKCYILDCGLEVFVWMGRSTSLDERKSASGAADELVSGIDQLKPQIIRVIEGFETVMFKSKFDSWPQTPDVTVSEDGRGKVAALLKRQGVNVKGLLKADPVKEEPQPYIDCTGHLQVWRVNGQEKILLSASDQSKFYSGDCFIFQYSYPGEDKEDCLIGTWIGKNSVEEERASANSLASKMVESMKFLASQARIYEGNEPIQFHSILQTFIVLKGGLSDGYKTYIAEKEIPDETYNENGVALFRIQGSGPDNMQAIQVEPVASSLNSSYCYILHNGPTVFTWSGNSTSTEDQELVERMLDLIKPNLQSKPQREGTESEQFWDLLGGKSEYPSQKISREAESDPHLFSCNFSKGKGSFSCLLEIYPIPLPPLKANS. 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03848 654 Gene3D Severin 7 132 IPR029006 -
Seca6g03848 654 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Seca6g03848 654 PRINTS Gelsolin family signature 592 611 IPR007122 GO:0051015
Seca6g03848 654 PRINTS Gelsolin family signature 532 552 IPR007122 GO:0051015
Seca6g03848 654 PRINTS Gelsolin family signature 436 454 IPR007122 GO:0051015
Seca6g03848 654 PRINTS Gelsolin family signature 469 489 IPR007122 GO:0051015
Seca6g03848 654 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Seca6g03848 654 Gene3D Severin 388 501 IPR029006 -
Seca6g03848 654 Gene3D Severin 247 355 IPR029006 -
Seca6g03848 654 CDD gelsolin_S2_like 138 223 - -
Seca6g03848 654 SUPERFAMILY Actin depolymerizing proteins 129 243 - -
Seca6g03848 654 CDD gelsolin_S5_like 517 608 - -
Seca6g03848 654 SMART VILL_6 392 489 IPR007122 GO:0051015
Seca6g03848 654 SMART VILL_6 19 117 IPR007122 GO:0051015
Seca6g03848 654 SMART VILL_6 254 344 IPR007122 GO:0051015
Seca6g03848 654 SMART VILL_6 137 234 IPR007122 GO:0051015
Seca6g03848 654 SMART VILL_6 519 606 IPR007122 GO:0051015
Seca6g03848 654 Pfam Gelsolin repeat 150 216 IPR007123 -
Seca6g03848 654 Pfam Gelsolin repeat 266 337 IPR007123 -
Seca6g03848 654 Pfam Gelsolin repeat 411 479 IPR007123 -
Seca6g03848 654 Pfam Gelsolin repeat 28 111 IPR007123 -
Seca6g03848 654 SUPERFAMILY Actin depolymerizing proteins 510 615 - -
Seca6g03848 654 CDD gelsolin_S3_like 254 343 - -
Seca6g03848 654 PANTHER VILLIN 9 633 IPR007122 GO:0051015
Seca6g03848 654 FunFam Gelsolin 520 612 - -
Seca6g03848 654 FunFam Villin-4 248 354 - -
Seca6g03848 654 CDD gelsolin_S1_like 12 124 - -
Seca6g03848 654 CDD gelsolin_S4_like 386 485 - -
Seca6g03848 654 Gene3D Severin 133 246 IPR029006 -
Seca6g03848 654 SUPERFAMILY Actin depolymerizing proteins 11 147 - -
Seca6g03848 654 SUPERFAMILY Actin depolymerizing proteins 382 528 - -
Seca6g03848 654 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 254 427 IPR036180 -
Seca6g03848 654 FunFam Villin-like 1 132 247 - -
Seca6g03848 654 Gene3D Severin 517 613 IPR029006 -
Seca6g03848 654 FunFam Gelsolin 6 131 - -
Seca6g03848 654 FunFam Villin-4 385 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03848 Seca-Chr6 106033034 106041971 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03848 - - gmx:100809968 1219.91