Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03833 ATGACATTTGCATATGATCCTTTGCATCTTCTTCTGTTGTTAGCCTTCTCAACATGCTGTTTGTCATCAACCAGCACCACATATTTAGGTAGCTCACCAACTGCTTCAACTGCTAAACCTCAGAGATTGGTCTCCAAACTCATTCACCACCGCTCTGTTCTCCATCCACATTACAACCCAAATGAAACAGCCAAAGACACAATTGAACTTGATATCCAACACTCAATAGCACGTTTAGCCTACTTGCAAGCAAGGATTGAAGGTTCTTTGGTCTCTAATGACTACAGGACTAATCTTTCTCCCTCCTCAACAGGTAGGACCATATTGGCCAACCTCTCCATAGGCCAGCCCCCTATCCCACAACTAGTGATCATGGACACAGCCAGTGACATCTTCTGGATTATGTGCACCCCTTGCTCAAATTGTGTCCACCATTCAAGTTCAATTTTTGATCCTTCAGAGTCTTCCACCTATTCTCCAGCATGCAGAACACCCTGTGACTTCAGTGGCTGCAAATGTGACCTCATGGATCGGTTGACATACAACATCACTTATGCAGACAAGTCCTTCTCATCAGGAACACTTGGCAGTGACATGCTAGTCTTTCAGACAAGTGATGAAGGTACCATTCAGGTACCTGATATAGAATTTGGGTGTGGCCACAACATTAAGCTCAATAATGATCCAGGGTATAATGGAATACTAGGACTAAACAATGGACATGAGTCCTTGGCATCACAAATTGGCCAAAAATTCTCTTACTGCATAGGCAGCCTAACTGACAAATATTATAATTACAACCAATTGATATTAGGTGAAGGGGCGGATCTTGAAGGCTATTCAACACATTTAAAAGTGCATAATGGCTTTTACTATCTCAACATGGAAGGCATAAGTATAGGAGAAAAGAGGCTTGACATAGCTCCAGCAACTTTTGAGATGAAACAGAATGGGACAGGTGGAGTCATAATTGACACAGGGTGTACACTTACCTTCCTAGTTGATGATGTGTATAAATTACTATGCAAAGAAGTTAGAAATCTCCTTGGTGGGTCGTTAAGAAGAGCTATAATTAGAAACATGGCATGGCTACTTTGCTACTTTGGGAGTGTGAGTAGAGACCTGGTTGGGTTTCCAGTTGTTACATTCCATTTTGGTGATGGAGCAGATTTGGTTTTGGACTCAGGAAGTCTTTTTCAACAGGTGAGGGATGACATGTTTTGCATGGCTGTAGGTCCAACAAATGAGACTGGCATCAGAAGTAGCCCCTCAGTTATTGGATTGTTAGCTCAGCAGAGTTACAATGTGGGATATGACCTCCTTAATCAATTTATTTACTTCCAAAGAATTGATTGTGAACTTCTTAGTGGTTGA 1374 0.4185 MTFAYDPLHLLLLLAFSTCCLSSTSTTYLGSSPTASTAKPQRLVSKLIHHRSVLHPHYNPNETAKDTIELDIQHSIARLAYLQARIEGSLVSNDYRTNLSPSSTGRTILANLSIGQPPIPQLVIMDTASDIFWIMCTPCSNCVHHSSSIFDPSESSTYSPACRTPCDFSGCKCDLMDRLTYNITYADKSFSSGTLGSDMLVFQTSDEGTIQVPDIEFGCGHNIKLNNDPGYNGILGLNNGHESLASQIGQKFSYCIGSLTDKYYNYNQLILGEGADLEGYSTHLKVHNGFYYLNMEGISIGEKRLDIAPATFEMKQNGTGGVIIDTGCTLTFLVDDVYKLLCKEVRNLLGGSLRRAIIRNMAWLLCYFGSVSRDLVGFPVVTFHFGDGADLVLDSGSLFQQVRDDMFCMAVGPTNETGIRSSPSVIGLLAQQSYNVGYDLLNQFIYFQRIDCELLSG. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03833 457 Gene3D Acid Proteases 278 455 IPR021109 -
Seca6g03833 457 SUPERFAMILY Acid proteases 109 452 IPR021109 -
Seca6g03833 457 CDD pepsin_A_like_plant 109 452 IPR034161 -
Seca6g03833 457 Gene3D Acid Proteases 91 272 IPR021109 -
Seca6g03833 457 ProSiteProfiles Peptidase family A1 domain profile. 108 448 IPR033121 -
Seca6g03833 457 PANTHER OS07G0603500 PROTEIN-RELATED 46 452 - -
Seca6g03833 457 FunFam Aspartyl protease family protein 275 454 - -
Seca6g03833 457 Pfam Xylanase inhibitor C-terminal 291 448 IPR032799 -
Seca6g03833 457 Pfam Xylanase inhibitor N-terminal 110 272 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03833 Seca-Chr6 105831274 105832647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03833 112 455 Miscellaneous Gene Families AT1G77480 23.947 1.09e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03833 - - gmx:100778792 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03833 6 105831274 105832647 Seca6g03833 6 105831274 105832647 ECH