Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03823 ATGGACTCAGATGCCGAAGATGCAAAACCCCAATCCCCGTTAAAGTCATCCAAGAAGAAGGACAAGAAGCACAAAAAGAAAATGGATACTCCACCTTCTGAATCAGTTCAGGTTCAGGCCAAGGTCCAAGTCGTCCATGAGCACCCACATAAAACGCCTCCCATTATTGGCTATTTCCCTTCTGGTTTTGATCCAGTTAAGTCTTCTAGCGACGGTCCCGGTTCAACCGGTTTCCAACTTTACCGAAACAGGAACTTGACCAAAAGGCTGCAGCTTGTGGTCAGCCCTGCTGGGTCTCCAGTGGAATTTGTCGGAACGAGTTATTCCGGTGAGGCTGCAGCCGGACACCGGGCCATGTATGCTCTTGGAGTCTTTGACAAGGAAGCTCAGACCTTGAAGGTTGTGCCTGTTGCTGCTAATAAGATATTCAGATTGGATCCAAAAATCAAAGGCTTGGAAGACAGGGAGCCTGCAAGCTCGACAATGGAAGAGCTGACTCCACAGCAGAAGGTGGCGCAGACTACTGCTATATGGGGTACAAAGAAGGAAATAGAGAAGGTATATTCTGAATCTTGTTTAATCTTTTTGCTAGCTGTGCTGCAAGATGAAGAACCTGATTCTCAAAGGAATCTGGATGTGAAAATGAAAAATGTTGTTGTAAACAAAAAGGCTCTTGAAAGTACAGAATCTCATGTTTCTCGCAATATACCACCATATGATGATTCTGCGACTACACCTCAGGAAGCTTATGTATTGGACAAAATCATCCTTAAAGGAGAATGGGATTACCTTGAAGACATTTATAATATTTTGCATCTGGAAGAAGCAGACTTCAGTGCTTACCCAATTTTTATTCGCAACAGGATACAAAGATTAAAGAAGATTAAGGATGAGTCAGAAAAGAAGAAGCTTTCTTGCATATTCTCATACATCAATCATCTTATAAAGTTCAAAGATCAGCACTCAATGGATGGTGTTTCCTCTGCAAAGGGCCATAAAATCCCCAACATTCTGCGTCATAGATTTTCAACAATGTTTGCTGTTGCTGAATCAAAAAGGCTGCCTGATGAAAAGATAAATCTTCTCGTTAGTTACATATTGGTGCTGACTCTTTTCTCTGATGAATTCCGAACTGACTACACAGATATAGCAAAGGATCTGAGGATGACTTTAATGCCCATACGACAATTCTATGAGCATTTGGGTTGCAAATTTGCACGCCAGAATAACACATCCTATGCCACGCTTCCTGTCCCACTTACATTTCCTGGTTTGAGGCAAAGGAAGCGTAAAAGGTAG 1299 0.4242 MDSDAEDAKPQSPLKSSKKKDKKHKKKMDTPPSESVQVQAKVQVVHEHPHKTPPIIGYFPSGFDPVKSSSDGPGSTGFQLYRNRNLTKRLQLVVSPAGSPVEFVGTSYSGEAAAGHRAMYALGVFDKEAQTLKVVPVAANKIFRLDPKIKGLEDREPASSTMEELTPQQKVAQTTAIWGTKKEIEKVYSESCLIFLLAVLQDEEPDSQRNLDVKMKNVVVNKKALESTESHVSRNIPPYDDSATTPQEAYVLDKIILKGEWDYLEDIYNILHLEEADFSAYPIFIRNRIQRLKKIKDESEKKKLSCIFSYINHLIKFKDQHSMDGVSSAKGHKIPNILRHRFSTMFAVAESKRLPDEKINLLVSYILVLTLFSDEFRTDYTDIAKDLRMTLMPIRQFYEHLGCKFARQNNTSYATLPVPLTFPGLRQRKRKR. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03823 432 MobiDBLite consensus disorder prediction 1 15 - -
Seca6g03823 432 MobiDBLite consensus disorder prediction 1 39 - -
Seca6g03823 432 Pfam A49-like RNA polymerase I associated factor 73 423 IPR009668 GO:0003677|GO:0006351
Seca6g03823 432 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49 36 432 IPR009668 GO:0003677|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03823 Seca-Chr6 105725164 105729211 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03823 K03005 - gmx:100812427 586.26