Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03773 ATGGAGACTCCACCTTCGCAGCAAGGCGTCGTCAAGAAGAAGGAGACAAGGGGACGAAAACCGAAGCCAAAGGACGACAAGAAAGAAGAACAACATGGGAAGACTATGAAGGAAGGGAGAAAGACACAACAGCAACAACAACAACCTTCCGTCGACGAGAAGTACACACAATGGAAGTCCCTCGTCCCTGTCCTCTATGACTGGCTTGCCAACCACAACCTCGTCTGGCCCTCTCTCTCTTGCCGGTGGGGCCCTCAGCTGGAGCAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCTGAGCAGACTGATGGTAGCGTTCCGAATACTCTGGTGATTGCGAATTGTGAGGTTGTTAAACCTAGGGTTGCAGCTGCAGAGCACATTTCACAGTTTAATGAAGAGGCACGCTCCCCATTTGTGAAGAAGTACAAGACCATCATTCATCCAGGCGAGGTGAACAGAATTAGGGAATTGCCACAAAATTCTAAGATAGTGGCTACGCACACGGACAGCCCTGATGTCCTCGTTTGGGACGTTGAAAGTCAACCTAACCGTCATGCTGTCCTTGGAGCCACAAACTCTCGTCCAGATTTGATATTGACGGGACACCAAGATAATGCAGAATTTGCTCTTGCAATGTGCCCAACTGAGCCCTATGTGCTTTCAGGAGGAAAGGACAAAACGGTGGTGCTGTGGAGTATTGAAGACCATATAACATCTGCTGCCACAGACTCCAAATCTAGTGGGTCAATTATCAAATCGAACTCCAAATCTGGGGAAGGCAATGATAAAACTGCTGATGGCCCTTCTGTTGGACCACGAGGTATCTACTGTGGGCATGAGGACACTGTTGAAGATGTGACTTTTTGCCCTTCTAGTGCACAGGAGTTCTGTAGCGTTGGAGATGATTCTTGCCTCATATTATGGGATGCCCGTGTTGGCTCTAGTCCCGTGGTTAAGGTTGAAAAGGCTCATAATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATGACAATCTGATTCTTACTGGATCGGCAGATAATTCTGTCCGTATGTTTGATCGCCGCAATCTCACCTCTAATGGAGTTGGGTCACCTATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGCGTGCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCAGAAGATGGTCTCTTAAACATCTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGATCTGGAAAATCATTAAGTGCTCCTCCAGGGTTGTTTTTCCAACATGCAGGTCATAGAGACAAAGTAGTTGACTTTCACTGGAATGCTTATGATCCATGGACTATTGTTAGCGTCTCTGATGACTGTGAAAGTACTGGTGGAGGGGGAACATTGCAGGTATGGAAATTATGTTTTCCATCTTTTGAGTATAGAAATATTTGTCTATATCATTTTCATTATTTCATATAG 1476 0.4593 METPPSQQGVVKKKETRGRKPKPKDDKKEEQHGKTMKEGRKTQQQQQQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATDSKSSGSIIKSNSKSGEGNDKTADGPSVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSLSAPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQVWKLCFPSFEYRNICLYHFHYFI. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03773 491 PANTHER WD40 REPEAT FAMILY 43 472 - -
Seca6g03773 491 MobiDBLite consensus disorder prediction 19 39 - -
Seca6g03773 491 Pfam WD domain, G-beta repeat 277 312 IPR001680 GO:0005515
Seca6g03773 491 Pfam WD domain, G-beta repeat 367 406 IPR001680 GO:0005515
Seca6g03773 491 Pfam WD domain, G-beta repeat 200 235 IPR001680 GO:0005515
Seca6g03773 491 Pfam WD domain, G-beta repeat 325 357 IPR001680 GO:0005515
Seca6g03773 491 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 357 - -
Seca6g03773 491 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 373 408 - -
Seca6g03773 491 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 408 IPR001680 GO:0005515
Seca6g03773 491 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 53 119 IPR022052 -
Seca6g03773 491 Gene3D - 28 473 IPR015943 GO:0005515
Seca6g03773 491 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 357 IPR001680 GO:0005515
Seca6g03773 491 MobiDBLite consensus disorder prediction 1 53 - -
Seca6g03773 491 MobiDBLite consensus disorder prediction 247 265 - -
Seca6g03773 491 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 321 IPR001680 GO:0005515
Seca6g03773 491 MobiDBLite consensus disorder prediction 247 275 - -
Seca6g03773 491 SUPERFAMILY WD40 repeat-like 140 472 IPR036322 GO:0005515
Seca6g03773 491 SMART WD40_4 195 235 IPR001680 GO:0005515
Seca6g03773 491 SMART WD40_4 272 312 IPR001680 GO:0005515
Seca6g03773 491 SMART WD40_4 424 471 IPR001680 GO:0005515
Seca6g03773 491 SMART WD40_4 317 357 IPR001680 GO:0005515
Seca6g03773 491 SMART WD40_4 366 406 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03773 Seca-Chr6 105070572 105077704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03773 281 474 Miscellaneous Gene Families AT5G08390 25.871 1.72e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03773 K10752 - gmx:100779302 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03773 6 105070572 105077704 Seca6g03773 6 105070572 105077704 ECH