Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03742 ATGGGGGAAGAGGTTGGCGTTACTGCAGCAAACTCTCTCCATCATCAAATTCAAAACAGCGAAAGCGATGATCAGAGCCTCCAATTGGACATATACCCTCTCAGTTGTTACTATTTTGGATCCAAAGATGCTATTCCCTTCAGAGACCACTCCTTCGCTGATCGTATTCAAAGGATGAAATCCAACTATGCTGCCCGTGGAATGCGAACTTGTGTGGAAGCTGTCATACTGGTTGAGTTGTTCAAACATCCACATTTGTTGCTGCTGCAAGTAAGAAATTCCTTCTTTAAACTTCCTGGTGGCCGTTTAAGGCCAGGTGAATCAGATACTGATGGATTGAAGCGTAAGCTAGCAAGGAAGCTTTCTCTTAATGAAGATGGAGATGGGGCAGAATGGGAGGTGGGTGAATGCCTTGGAATGTGGTGGAGACCTGATTTTGAAACATTAATGTATCCCTTCTTGCCACCTAACGTAAAACAGCCAAAGGAATGTACAAAACTCTTCCTTGTAAAGCTGCCAGAAAGTCGAAAGTTCATTGTGCCAAAGAACCTAAGGTTGCTTTCAGTCCCATTATGCCAAGTTCATGAAAACCACAAGGTATGGACTATGGATTTCCATCAGTCTTGGAAAGTATATAGGGTGTCCAGGTATTCCATATGGTGCACAGACAGTATCATTGAGCCTTCTCAGTACTAA 696 0.4339 MGEEVGVTAANSLHHQIQNSESDDQSLQLDIYPLSCYYFGSKDAIPFRDHSFADRIQRMKSNYAARGMRTCVEAVILVELFKHPHLLLLQVRNSFFKLPGGRLRPGESDTDGLKRKLARKLSLNEDGDGAEWEVGECLGMWWRPDFETLMYPFLPPNVKQPKECTKLFLVKLPESRKFIVPKNLRLLSVPLCQVHENHKVWTMDFHQSWKVYRVSRYSIWCTDSIIEPSQY. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03742 231 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 27 219 - -
Seca6g03742 231 PIRSF CPSF-25 3 224 IPR016706 GO:0003729|GO:0005849|GO:0006378
Seca6g03742 231 Pfam Nucleotide hydrolase 28 201 IPR016706 GO:0003729|GO:0005849|GO:0006378
Seca6g03742 231 SUPERFAMILY Nudix 49 179 IPR015797 -
Seca6g03742 231 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 24 204 IPR016706 GO:0003729|GO:0005849|GO:0006378
Seca6g03742 231 FunFam Pre-mRNA cleavage factor Im subunit 2 27 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03742 Seca-Chr6 104734167 104736990 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03742 K14397 - gmx:100791216 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03742 6 104734167 104736990 Seca6g03742 6 104734167 104736990 ECH