Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03727 ATGGCTTCTACTTCTACTTCTGCAGTTTCAATGGCAATGCCACTAACTAACGCCAGCCAGAAGAGGGTGATGCCTAGCTCTGAGGCATTCTTCAAGCCACTGCCCCTAAGATCTTCAAAGGCTGTGGCAGCACCAAAGCCCAATGGAAGGTTTCAAGTCAGGGCCTCCATGAAGGAGAAAGTTGTGACAGGGCTCACAGCAGCTGCATTGACAGCTTCAATGATGGTTCCTGATGTGGCTGAAGCTGCCGTTTCACCTTCTCTCAAGAACTTCTTGCTCAGCATCGCAGCCGGTGGAGTTGTGGTTGTAGTCCTTGTTGGTGCCGTGGTGGGTGTTGCCAATTTCGATCCTGTCAAGCGAAGCTGA 366 0.5137 MASTSTSAVSMAMPLTNASQKRVMPSSEAFFKPLPLRSSKAVAAPKPNGRFQVRASMKEKVVTGLTAAALTASMMVPDVAEAAVSPSLKNFLLSIAAGGVVVVVLVGAVVGVANFDPVKRS. 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03727 121 PANTHER OS07G0673550 PROTEIN 4 121 - -
Seca6g03727 121 FunFam Photosystem II psbX protein 83 121 - -
Seca6g03727 121 Gene3D Single helix bin 83 121 - -
Seca6g03727 121 Pfam Photosystem II reaction centre X protein (PsbX) 84 121 IPR009518 GO:0009523|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03727 Seca-Chr6 104585961 104586326 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03727 - - gmx:100306291 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00652 12 5880356 5880721 Seca6g03727 6 104585961 104586326 PCT