Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03716 ATGTACTGCATTTCTTTCGGTATCTTTACTGACTATCTACAGGCATGTGTGGAGTTCAACCGTGGGCGATTTTCTGATTCGCTTGAGTTGTATAAGAGGGCATTGCAAGTGTATCCCAATTGCCCTGCAGCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAAAAGGCTCAACAGGCATTTGAGCGTGTCTTGCAGCTAGATCCAGAAAATGTCGAGGCTCTGGTTGCACTTGCAATAATGGACTTGCGCACCAATGAAGCTGCTGGAATTAGGAAAGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCATACTGTGCAATGGCTCTAAATTATCTTGCGAATCATTTTTTCTTCACTGGTCAACATTTTTTAGTTGAGCAACTGACTGAAACTGCATTAGCTGTTACCAATCATGGTCCAACAAAGTCTCACTCTTACTACAATTTAGCACGCTCTTACCATAGCAAGGGAGACTACGACAAAGCCGGGGTGTATTACATGGCATCTGTCAAGGAAGTCAACAAGCCCCATGAATTTGTTTTTCCTTATTATGGTTTGGGACAGGTACAAATAAAGTTGGGAGATTTTAGAAGTGCGCTCTCAAACTTTGAAAAGGTTTTGGAGGTGTACCCGGATAATTGCGAGACGTTGAAGGCACTTGGGCACATATATGTTCAGCTTGGTCAGACTGACAAGGGCCAGGACTTCATTAGGAAAGCTACAAAAATTGATCCCCGTGATGCTCAGGCATTTCTTGAACTGGGAGAATTGTTAATTCTGTCTGACACAGGAGCTGCACTGGATGCATTCAAAACTGCTCGGACTCTTTTTAAAAAGGGAGGTCAAGAAGTACCAATTGAATTACTCAATAACGTTGGTGTCCTTCAGTTTGAAAGGGGAGAATTTGAGCTTGCTCAACAAACTTTTAAGGAGGCTCTAGGTGATGGAATTTGGCTTTCTTTTATTAACAATGGAAATAAGTTTTCCATTGATGCTGCTACTTCTACTCTTCAATTCAAGGACATGCAATTATTTCATGACCTTGAAAGTAATGGTCACCATGTGGAGGTACCATGGGATAAAGTCACAGTACTCTTTAACCTGGCCAGATTACTTGAGCAGTTAAATGAATCTGGAACTGCAAGCATATTATATCGCCTAATCTTGTTCAAGTACCCTGACTATATTGATGCATATCTGAGGCTAGCTGCTATTGCAAGAGTTCGGAACAACATTCTGTTAAGCATTGAACTGGTTAATGACGCCCTGAAGGTGAATGACAAGTGTCCGAATGCATTATCTATGCTTGGTGAGTTGGAGTTAAAAAATGATGATTGGGTGAAGGCGAAAGAAACTCTCCGGGCAGCTAGTGATGCCACCGATGGGAAGGACTCATATGCTACTCTTTCTCTAGGAAACTGGAATTACTTTGCAGCAGTTCGCAATGAAAAGAGAAATCCAAAGCTAGAAGCTACTCATTTGGAAAAGGCCAAGGAACTATATACAAAAGTTCTGATTCAGCATTCTGCTAATTTATATGCTGCCAATGGTGCTGGGGTAGTTTTAGCAGAAAAAGGCCATTTTGATGTTGCAAAGGATATCTTTACACAGGTTCAAGAAACTGCCAGTGGTAGTGTCTTTGTCCAAATGCCTGATGTTTGGATAAATCTGGCACATGTTTATTTTGCCCAGGGGAATTTTGCTTTGGCTGTGAAAATGTATCAGAATTGCTTGCGGAAGTTTTATTACAACACAGACTCACAGATACTTCTATATTTAGCTCGTACCCATTATGAAGCCGAACAGTGGCAGGATTGTATAAAGACTCTACTGAGAGCCATTCATTTGGCACCCTCAAACTACACATTAAGGTTTGATGCAGGGGTTGCAATGCAAAAGTTTTCAGCATCAACGTTACAAAAGGCAAAAAGGACTGCAGATGAGGTGAGAGCAACTGTTGCAGAGCTACAAAATGCTGTTCGTGTATTTAGTCAGTTGTCTGCTGCTTCCAACCTACATATTCATGGATTTGATGAGAAGAAAATAGACACTCATGTCGGATATTGCAACCACTTACTTTCAGCTGCAAAAGTTCATCTTGAAGCAGCTGAGCGTGAGGAGCAGCAAGTGCGACAGAGACAAGAACTTGCTCGTCAGGTTGCATTGGCTGAGGAAGCCCGGCGAAAGGCTGAAGAGCAAAGAAAATTTCAGATTGAAAGGAGAAAGCAAGAGGATGAGCTAAAGCGAGTGCAACAACAGGAGGAACATTTTAAGCGGGTTAAGGAGCAATGGAAGAGCAGCACACATTCAAAACGGAGGGAAAGGTCAGATGATGAAGAGGGTGGGACTGGCGAGAAGAAGAGAAGAAAAGGTGGAAAGAAGAGAAAGAAGGATAAGCACTCAAAATCACGCTATGACACAGAGGAAGCAGAAGCTGACATGATGGATGAACAGGAAATGGAGGATGAAGATGCTGACATAAACTGCAGAGAGGAGCCCCAAAGTATGATGAATGATGATGTTGAGGAAAATGCTCAGGGTCTTCTTGCAGCAGCTGGACTTGAAGATTCTGATGCAGATGATGAGACGGCTGCACCTTCCTCAACCCTAGGCCGGCGGAGGCAAGCATTATCAGAATCTGATGATGATGAACCATTACAGAGGCAATCAAGTCCTATAAGGGAAAATTCTGCTGATATGCAGGTGAGTGATGGAGAAATCAGGGACGGGGATAAGACAAATGGAGATGATGGCAGCGATGAGGAGAAACAATATTGA 2802 0.4261 MYCISFGIFTDYLQACVEFNRGRFSDSLELYKRALQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVEALVALAIMDLRTNEAAGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFRSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPIELLNNVGVLQFERGEFELAQQTFKEALGDGIWLSFINNGNKFSIDAATSTLQFKDMQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNESGTASILYRLILFKYPDYIDAYLRLAAIARVRNNILLSIELVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRAASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTKVLIQHSANLYAANGAGVVLAEKGHFDVAKDIFTQVQETASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYYNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVALAEEARRKAEEQRKFQIERRKQEDELKRVQQQEEHFKRVKEQWKSSTHSKRRERSDDEEGGTGEKKRRKGGKKRKKDKHSKSRYDTEEAEADMMDEQEMEDEDADINCREEPQSMMNDDVEENAQGLLAAAGLEDSDADDETAAPSSTLGRRRQALSESDDDEPLQRQSSPIRENSADMQVSDGEIRDGDKTNGDDGSDEEKQY. 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03716 933 Pfam Tetratricopeptide repeat 46 76 IPR001440 GO:0005515
Seca6g03716 933 Gene3D Tetratricopeptide repeat domain 496 681 IPR011990 GO:0005515
Seca6g03716 933 ProSiteProfiles TPR repeat region circular profile. 188 221 - -
Seca6g03716 933 Pfam Tetratricopeptide repeat 152 179 IPR019734 GO:0005515
Seca6g03716 933 Coils Coil 701 768 - -
Seca6g03716 933 ProSiteProfiles TPR repeat profile. 222 255 IPR019734 GO:0005515
Seca6g03716 933 SMART tpr_5 8 41 IPR019734 GO:0005515
Seca6g03716 933 SMART tpr_5 151 184 IPR019734 GO:0005515
Seca6g03716 933 SMART tpr_5 438 471 IPR019734 GO:0005515
Seca6g03716 933 SMART tpr_5 404 437 IPR019734 GO:0005515
Seca6g03716 933 SMART tpr_5 222 255 IPR019734 GO:0005515
Seca6g03716 933 SMART tpr_5 43 76 IPR019734 GO:0005515
Seca6g03716 933 SMART tpr_5 595 628 IPR019734 GO:0005515
Seca6g03716 933 SMART tpr_5 188 221 IPR019734 GO:0005515
Seca6g03716 933 SMART tpr_5 559 592 IPR019734 GO:0005515
Seca6g03716 933 SMART tpr_5 370 403 IPR019734 GO:0005515
Seca6g03716 933 FunFam protein CTR9 homolog 353 496 - -
Seca6g03716 933 SUPERFAMILY TPR-like 148 321 IPR011990 GO:0005515
Seca6g03716 933 FunFam Rna polymerase-associated protein ctr9 497 681 - -
Seca6g03716 933 Gene3D Tetratricopeptide repeat domain 10 180 IPR011990 GO:0005515
Seca6g03716 933 MobiDBLite consensus disorder prediction 818 836 - -
Seca6g03716 933 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 14 928 IPR031101 GO:0006355|GO:0016570
Seca6g03716 933 MobiDBLite consensus disorder prediction 750 795 - -
Seca6g03716 933 Gene3D Tetratricopeptide repeat domain 363 493 IPR011990 GO:0005515
Seca6g03716 933 MobiDBLite consensus disorder prediction 750 933 - -
Seca6g03716 933 ProSiteProfiles TPR repeat profile. 559 592 IPR019734 GO:0005515
Seca6g03716 933 Pfam Tetratricopeptide repeat 564 627 - -
Seca6g03716 933 ProSiteProfiles TPR repeat profile. 188 221 IPR019734 GO:0005515
Seca6g03716 933 ProSiteProfiles TPR repeat region circular profile. 43 76 - -
Seca6g03716 933 SUPERFAMILY TPR-like 12 176 IPR011990 GO:0005515
Seca6g03716 933 ProSiteProfiles TPR repeat profile. 43 76 IPR019734 GO:0005515
Seca6g03716 933 FunFam Protein CTR9 homolog 184 325 - -
Seca6g03716 933 FunFam protein CTR9 homolog 11 182 - -
Seca6g03716 933 Gene3D Tetratricopeptide repeat domain 181 332 IPR011990 GO:0005515
Seca6g03716 933 SUPERFAMILY TPR-like 368 639 IPR011990 GO:0005515
Seca6g03716 933 MobiDBLite consensus disorder prediction 909 933 - -
Seca6g03716 933 Pfam Tetratricopeptide repeat 200 258 - -
Seca6g03716 933 MobiDBLite consensus disorder prediction 883 897 - -
Seca6g03716 933 Coils Coil 647 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03716 Seca-Chr6 104415895 104432889 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03716 K15176 - gmx:100794371 1649.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03716 6 104415895 104432889 Seca6g03716 6 104415895 104432889 ECH