Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03713 ATGAAGATGATTCTAACCATCTTCTTCTTAATTTTTTCTCTTCTCTCCTTCTCCCATGCTTCTGTAGTAGATTTCTGTGTTGCAGATTACACATTTCCTAATGGCCCTGCAGGGTATTCTTGCAAGAAGCCTGCAAAGGTGACTGTGGATGACTTTGTCTACAGTGCCCTTGGCATAGCTGGTAACACCTCAAACATTATCAAAGCTGCAGTTTCCCCTGCATTTGATGCTCAGTTCCCTGGTGTCAATGGCCTTGGCATTTCCATTGCCCGTTTAGACTTAGCAGTTGGTGGAGTTATCCCACTTCACACACACCCTGGTGCTTCAGAAATACTAGTGGTAATTCAAGGAACAATCTGTGCTGGATTTGTTTCTTCTGACAACACTGTCTACCTTAAAACTCTCAAAAAGGGAGACATTATGGTATTCCCACAAGGGTTGCTTCACTTCCAAGTTAATGGAGGTGGAACTCCAGCTTTGGCATTTGTAAGCTTTAGTAGTGCTAATCCTGGTCTTCAAATCTTGGACTTTGCTCTGTTCAAAAGTGATTTCCCCACTGAATTGATAACAGCAACCACTTTCCTTGATGCTGCTCAAGTGAAGAAGCTTAAGGGTGTTCTTGGAGGTAGTGGTTAA 636 0.4292 MKMILTIFFLIFSLLSFSHASVVDFCVADYTFPNGPAGYSCKKPAKVTVDDFVYSALGIAGNTSNIIKAAVSPAFDAQFPGVNGLGISIARLDLAVGGVIPLHTHPGASEILVVIQGTICAGFVSSDNTVYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFVSFSSANPGLQILDFALFKSDFPTELITATTFLDAAQVKKLKGVLGGSG. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03713 211 ProSitePatterns Germin family signature. 98 111 IPR019780 GO:0030145
Seca6g03713 211 Gene3D Jelly Rolls 19 210 IPR014710 -
Seca6g03713 211 FunFam Auxin-binding protein ABP19a 19 210 - -
Seca6g03713 211 Pfam Cupin 60 201 IPR006045 -
Seca6g03713 211 CDD cupin_OxOx 18 207 IPR001929 GO:0030145
Seca6g03713 211 SUPERFAMILY RmlC-like cupins 21 204 IPR011051 -
Seca6g03713 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 204 - -
Seca6g03713 211 PRINTS Germin signature 166 181 IPR001929 GO:0030145
Seca6g03713 211 PRINTS Germin signature 133 153 IPR001929 GO:0030145
Seca6g03713 211 PRINTS Germin signature 103 123 IPR001929 GO:0030145
Seca6g03713 211 SMART Cupin_1_3 55 201 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03713 Seca-Chr6 104368132 104368767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03713 1 210 Miscellaneous Gene Families AT5G20630 70.000 1.19e-104 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03713 - - gmx:100806553 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03713 6 104368132 104368767 Seca6g03713 6 104368132 104368767 PCT