Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03705 ATGGTAGCCATGGCCGGCACCAAGAGAATAGAAACCTACGAAGAGTTCGCGAAAGTTCACGCACTGTTACTCGCGGCGTCGGGGTTGCCTGATTCACTGCACCGCCACCTCTTCCAGAAGCTCTCTGCCGAGACCTTCGACGGCGGCGACCACTTCCAGATTGAGCTCTGCGAGGACAGCCGCCAGAGGCGCCTCGTTCTCACCTCTGATTCCATGGCCAAGAACTCCGACGTCTTCCTCATCGATCACGCATGGACATTCAGACTCTCCGACGCTTACAAGCAGCTGCGTGAGGTTCCGGGATTGGCAGAGAGGATGGGTTCTTTGATGTGTGTGGATATTGATATGAATTTGGATGCTGAAGCTGAGGTGAATGAGATTGCTAATGGAGTTTCGAGTGATAAGCCCGATGTTGTGGAAAAACTGGAGTGTGATGTTCGTGAGGCAAAAGAGAAAGGAGATGGCAAGTTGCGATGGTTGGAGCTTGAGGGGCTTGACATTGATGATGATATGCTTCTGTCTCTCGGCTTATCTACTAGATTTCCGGATTTGGTGGCACTTAGCCTATTTGGAAACAAGCTCAATAGAGCTGAAGTGATTGTTCAGGAAGTTATCAAATTTAAACATCTTAAAGGACTCTGGCTGAACAATAATCCCGTTCTTAAAAATGGTGATGATGAGCTTGCAGGTATTGTGCTTAAGGAGTTACCAGAACTGGAGATTTATAATTCAACTTTCACAAGCAATTTTGGGGAGTGGGCCTTGGGCTTTTGTGCAGGGATATATGGAAAGGATAACCCAGCAAATGCTGATCAGGCTGACAGTTCACTGCAGAGCGTGTCCACTCTTGATCTTTCAAATAGAAACATTCACAATTTAATCAACAAGGCATTTTCACCCATTTGTTTGCCATCTCTTTCATACTTGAATATTCATGGAAATCCATTGGAGCAAAACTCAGTTGGTGACTTGGTAGATCTGCTTAGGAGATTCCCTAGCTTATGTTCATTGGAGGTGGATATTCCTGGTCCACTTGGTGGAAGTGCCATTGAAATTCTGGAATCTCTTCCGGAGATTTCTGAACTAAATGGTATCAGTGCATCCAAAATATTGGAAACTGGAAAGCATGTTATTGATGCAATGCTTCTTCCTCGTCTTCCTGAATGGACTCCTGATGAGCCTCTTGCTGATCGTATTATAAGTGCAATGTGGCAATATCTAATGACATATAGACTTGCAGATGAAGAAAAGCTAGATGAAACATCTGTATGGTATGTGATGGATGAACTAGGTTCTGCTTTGCGGCATAGTGATGAGCCAAATTTCAGAGTGACACCTTTTCTTTTCATGCCAGAGGGTAATCTGGCATCAGCAGTGAGCTTTTCTATTCTATGGCCAACACAGAATGTTCAGAAAGGTGAGGAATGCACTCGTGATTTCCTTCCTGGCTTTGGGGAGGATAAACAACGTTCTGCCAGACTTTCTGCCTGGTTCCACACGCCAGAGAACTATTTTATCCAAGAGTATGAGAAGCACAACAAAAAATTGCAGTCTACAAGTTTAGTACCACCCACAATACAGTCTTCGGAGACTAGAAGTATTCGTCAACCCGATGGGCGTCCTTTACGTGTTTACACAGATATACCTCACGTGGAGGAAAACTTGACACATCCTGAGTTTATGATCACAAAGGAACCAAAAGATGCAGATATAATTTGGACAGGTGTGCAGGTAGATGAGGATATGAAGAAGGCCATGGGAATAACAGATCAGCAATACATAAACCAATTTCCTTTTGAGGCTTGTCTTGTCATGAAACATCATTTAGCGGAAACAATTCAGAAGACACATGGATCTCCTCAATGGTTGCAGCCTACTTATAATCTTGAAACACATCTATCTCAACTTATTGGTGACTATAATGTACGCAAAAGAGAAGGACAAGACAATCTTTGGATCTTAAAACCCTGGAACATGGCCCGAACTATTGATACTACTGTGACCGACAATTTACCTGCCATCATCCGGCTCATGGAAACTGGTCCAAAAATTTGCCAGAAGTATATTGAACAACCTGCTTTGTACCAGGGGAAAAAGTTTGATCTCCGTTACATAGTACTGGTTCGAAGCATGCACCCTTTGGAGATATTCCTGTCCGATTGTTTCTGGGTTAGAATAGCCAACAACCAATATTCTTTGGACAGAAGTAGTTTTTTTGAGTATGAAACTCACTTCACTGTTATGAATTATCGTGGAAGAATAAATCACAAGAGTGTTAAGGATTTTGTGGTGGAATTTGAGGAAGAACATCAAGTTAAATGGTTGGATATACATACAAGAGTAAGGAATATGATTCGATCAGTGTTTGAGGCAGCCACTGTTGCACATCCTGAGATGCATAGTCCAACATCAAGGGCAATGTATGGCGTAGATGTCATGTTGGACAGCTCTTTCCAACCTAAGTTACTAGAGGTGACTTACTGCCCTGATTGTACAAGAGCTTGCAAATATGACATGGATATCGTGGTTGGTGATGAAGGTGTTGCCAAAGGTTGTGATTTCTTCAACAACGTGTTCAGGTGTCTCTTTTTGAATGAAAATTCGCAGGTTAGCCCATTGTAA 2622 0.4306 MVAMAGTKRIETYEEFAKVHALLLAASGLPDSLHRHLFQKLSAETFDGGDHFQIELCEDSRQRRLVLTSDSMAKNSDVFLIDHAWTFRLSDAYKQLREVPGLAERMGSLMCVDIDMNLDAEAEVNEIANGVSSDKPDVVEKLECDVREAKEKGDGKLRWLELEGLDIDDDMLLSLGLSTRFPDLVALSLFGNKLNRAEVIVQEVIKFKHLKGLWLNNNPVLKNGDDELAGIVLKELPELEIYNSTFTSNFGEWALGFCAGIYGKDNPANADQADSSLQSVSTLDLSNRNIHNLINKAFSPICLPSLSYLNIHGNPLEQNSVGDLVDLLRRFPSLCSLEVDIPGPLGGSAIEILESLPEISELNGISASKILETGKHVIDAMLLPRLPEWTPDEPLADRIISAMWQYLMTYRLADEEKLDETSVWYVMDELGSALRHSDEPNFRVTPFLFMPEGNLASAVSFSILWPTQNVQKGEECTRDFLPGFGEDKQRSARLSAWFHTPENYFIQEYEKHNKKLQSTSLVPPTIQSSETRSIRQPDGRPLRVYTDIPHVEENLTHPEFMITKEPKDADIIWTGVQVDEDMKKAMGITDQQYINQFPFEACLVMKHHLAETIQKTHGSPQWLQPTYNLETHLSQLIGDYNVRKREGQDNLWILKPWNMARTIDTTVTDNLPAIIRLMETGPKICQKYIEQPALYQGKKFDLRYIVLVRSMHPLEIFLSDCFWVRIANNQYSLDRSSFFEYETHFTVMNYRGRINHKSVKDFVVEFEEEHQVKWLDIHTRVRNMIRSVFEAATVAHPEMHSPTSRAMYGVDVMLDSSFQPKLLEVTYCPDCTRACKYDMDIVVGDEGVAKGCDFFNNVFRCLFLNENSQVSPL. 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03705 873 Pfam Tubulin-tyrosine ligase family 591 841 IPR004344 GO:0036211
Seca6g03705 873 Gene3D - 667 852 - -
Seca6g03705 873 ProSiteProfiles TTL domain profile. 537 865 IPR004344 GO:0036211
Seca6g03705 873 MobiDBLite consensus disorder prediction 517 535 - -
Seca6g03705 873 MobiDBLite consensus disorder prediction 517 541 - -
Seca6g03705 873 SUPERFAMILY RNI-like 156 363 - -
Seca6g03705 873 PANTHER TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12 6 872 IPR027749 -
Seca6g03705 873 Gene3D Ribonuclease Inhibitor 262 369 IPR032675 -
Seca6g03705 873 Gene3D Ribonuclease Inhibitor 121 249 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03705 Seca-Chr6 104330867 104337315 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03705 K16609 - gmx:100809212 1517.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03705 6 104330867 104337315 Seca6g03705 6 104330867 104337315 ECH