Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03638 ATGTCTTCTTCTTCCCTCTCCTTCCTTCATTCTTGTTCTTCTTCTTCTTCCTCTTCCTTGTTGGCAATTTCAACGCCAAATCCCAAGCCCTCTTCCTCCTTATCTTTTCTGGTTGAAGCCAATTCCAAAACCAGAAGGGAAAACAGGACAGCTCGCCACATCCGTATCAGGAAGAAGGTTGAAGGGACACCCGAAAGACCAAGATTGTCCGTCTTCCGATCCAACAAGCATCTCTCTGTCCAGGTCATAGATGACACCAACATGCACACACTTGCTTCAGTTTCAACAATGCAGAAGACAATTGCTGAAGAGTTCAACTACACTTCTGGTCCTACAGTTGAAGTAGCAAAGAGGGTGGGTGAGATCATTGCAAAATCCTGTCTGGAGAAAGGGATCACAAAGGTGGCCTTTGACCGAGGCGGATACCCATACCATGGTCGTGTTGAAGCACTTGCTGAGGCAGCTCGTGAGCATGGCCTGGAGTTCTAA 489 0.4744 MSSSSLSFLHSCSSSSSSSLLAISTPNPKPSSSLSFLVEANSKTRRENRTARHIRIRKKVEGTPERPRLSVFRSNKHLSVQVIDDTNMHTLASVSTMQKTIAEEFNYTSGPTVEVAKRVGEIIAKSCLEKGITKVAFDRGGYPYHGRVEALAEAAREHGLEF. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03638 162 FunFam 50S ribosomal protein L18 43 162 - -
Seca6g03638 162 NCBIfam 50S ribosomal protein L18 45 162 IPR004389 GO:0003735|GO:0005840|GO:0006412
Seca6g03638 162 SUPERFAMILY Translational machinery components 45 160 - -
Seca6g03638 162 Gene3D - 43 162 - -
Seca6g03638 162 MobiDBLite consensus disorder prediction 1 34 - -
Seca6g03638 162 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 41 162 IPR005484 GO:0003735|GO:0005840|GO:0006412
Seca6g03638 162 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 43 162 IPR005484 GO:0003735|GO:0005840|GO:0006412
Seca6g03638 162 CDD Ribosomal_L18_L5e 56 160 - -
Seca6g03638 162 Hamap 50S ribosomal protein L18 [rplR]. 44 162 IPR004389 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03638 Seca-Chr6 103641534 103644460 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03638 K02881 - gmx:100306308 254.603