Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03630 ATGGGTTTCAAGTATATGCTGGTTGTTATGTGTCTTTGGGCTTGGTCTGGATCCTTGGCTTTTGCAACTTCTGATGATGGGTTGATGAGGGTTAGTCTAAAAAGGAGGAATTTAGACATTAACAGTCTTAATGCTCCAAGAATCAAAGAAGCTGTGCATCTGAGAGATTTAGGGAGTGTTGATGAAAATTGTTGCAAAGAAAATGTAGTATATCTTAAGAATTATCTTGATGCACAATATTTTGGGGAAATTGGTATTGGTTCACCCCCACAATACTTCAATGTTGTGTTTGACACTGGCAGCTCAAATCTTTGGGTCCCATCTTCCAAATGCATCTTCTCTATCGCTTGCTATTTTCATTCCAAGTATAGGTCGAGGATTTCTAGCACCTATACCGAAATTGGAATACCTTGCAAAATCCCTTATGATGAAGGATACATATATGGATACTTCAGCAAAGATAATGTTAAAGTTGGGGATGTTGTCATCAAAGATCAAGAATTTTCTGAGATTACAAGGGCCACTTTGGCACTTTTAGCTCTTCCATTTGATGGGATACTTGGACTTGGATTCCAGGACATTTCAGTTGGAAAAGTGACACCAGTTTGGTATAATATGATAGAACAAGGGCACATATGTGACAAAGTTTTCTCTCTTTGGTTAAATCAAGACCCAATGGCAAAGGTAGGAGGTGAGATTGTCTTTGGTGGTATTGATTTCAGCCATTTTAGAGGTGACCACACTTATGTTCCACTTTCTCAAAAGGGTTATTGGCAGATTGAAGTGGGAGATGTTCTACTTGCAAATAATTCAACAGGGTTATGTGAGGGGGGCTGTTCTGCAATTGTGGACTCAGGAACATCTTTAATTGCTGGTCCAACTAGTGTTGTGGCTCAAATTAACCATGCCATTGGAGCAGAAGGCTATGTCAGTTTTGAATGTAAAAATATTATCCATAACTATGGGGATACGATTTGGGAATCCTTGATTTCTGGGTTAAATCCTGATATCTTATGCGTTGACATTGGACTCTGCTCAAATAATGAATTTCATACAATGGAGTACAGTTTTCCATTTTCTTAA 1083 0.3841 MGFKYMLVVMCLWAWSGSLAFATSDDGLMRVSLKRRNLDINSLNAPRIKEAVHLRDLGSVDENCCKENVVYLKNYLDAQYFGEIGIGSPPQYFNVVFDTGSSNLWVPSSKCIFSIACYFHSKYRSRISSTYTEIGIPCKIPYDEGYIYGYFSKDNVKVGDVVIKDQEFSEITRATLALLALPFDGILGLGFQDISVGKVTPVWYNMIEQGHICDKVFSLWLNQDPMAKVGGEIVFGGIDFSHFRGDHTYVPLSQKGYWQIEVGDVLLANNSTGLCEGGCSAIVDSGTSLIAGPTSVVAQINHAIGAEGYVSFECKNIIHNYGDTIWESLISGLNPDILCVDIGLCSNNEFHTMEYSFPFS. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03630 360 ProSiteProfiles Peptidase family A1 domain profile. 80 360 IPR033121 -
Seca6g03630 360 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 281 292 IPR001969 GO:0004190|GO:0006508
Seca6g03630 360 FunFam Lysosomal aspartic protease 66 307 - -
Seca6g03630 360 SUPERFAMILY Acid proteases 9 311 IPR021109 -
Seca6g03630 360 PRINTS Pepsin (A1) aspartic protease family signature 86 106 IPR001461 GO:0004190|GO:0006508
Seca6g03630 360 PRINTS Pepsin (A1) aspartic protease family signature 281 292 IPR001461 GO:0004190|GO:0006508
Seca6g03630 360 PRINTS Pepsin (A1) aspartic protease family signature 231 244 IPR001461 GO:0004190|GO:0006508
Seca6g03630 360 Pfam Eukaryotic aspartyl protease 79 312 IPR033121 -
Seca6g03630 360 SUPERFAMILY Saposin 311 353 IPR011001 -
Seca6g03630 360 Gene3D - 309 352 - -
Seca6g03630 360 ProSiteProfiles Saposin B type domain profile. 309 349 IPR008139 -
Seca6g03630 360 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 57 320 IPR001461 GO:0004190|GO:0006508
Seca6g03630 360 Pfam Saposin-like type B, region 2 313 345 IPR008138 -
Seca6g03630 360 Gene3D Acid Proteases 29 237 IPR021109 -
Seca6g03630 360 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 95 106 IPR001969 GO:0004190|GO:0006508
Seca6g03630 360 Gene3D Acid Proteases 238 308 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03630 Seca-Chr6 103570342 103574810 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03630 K08245 - gmx:100500551 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03630 6 103570342 103574810 Seca6g03630 6 103570342 103574810 ECH