Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03592 ATGGATTCCCAACCTTCCCAACAATCGTGGGGAAGGTCACCCACCCTTTCCCACCACCATCCCCTAAACCGAACCACTTCCTCAACCTCATCCTCTTCCCCTTCCTTCTCCAAATCCAATTCCGATTCCATCCAAAGCCTCTCTTCCATCCTCAACAACCCTCTTTCTTCCACCACCTTCTCCTCTCCCGAATTTGCCCCCATCGTCTCTTCCAAAGCTGCCTCTGAGGTCTCCCGATCCGATTTCCTCCCTTACCTCTCCGCCATCTCCGACCCCTACCACCGCTTCGATGACATCCGGAAGCATTCCACCAAGGAGATCGCCGCCGACGTCGACGGCGCCGGCGAAGCTCTTGTCGCCTGCCTACGCGAGGTCCCCGCGCTCTACTTCAAGGAGGATTTCCGACTCGAGGATGGCGCCACCTTCCGCGCAGCTTGTCCCTTCTCCAGCATCTCTGAGAACTCCATGCTTCAGGAGAAGCTCTCGCAGTACCTCGACGTGGTGGAGCTGCACCTTGTAAAGGAGATCTCGCTACGGTCCTCTTCGTTCTTCGAGGCGCAGGGGCAATTGCAGGACCTCAACGCCAAGATCGTTGAAGGATGCAGCCGGATTCGACACTTGAAGGACACGGTTCGGCTCATCGACTCCGATTTGGTCGAGTCTGCTAGGCAGATTCAGCAGCTCAATGCCACGAGGACCAACCTCTTGGCGCTTCTGCAGAAACTCAGGCTCATATTATACGTTAACCAAGCGCTTTCTGCACTCAAATTGCTTGTTGCATCTGCAGATTGTGCTGGAGCACTGGATGTAACTGATGATTTGCAACATTTACTGGATGGAGATGAGCTCACTGGTCTTCATTGCTTTCGTCATCTTAGAGATCATGTGATAGGCTTCATAGAATCCATAAACAGCATTCTTTCAGCAGAGTTTATTCGAGCTTCCTTACAGGATGCTGCGGAAACAGATGCTATAATTTTATCTAAAGCTAAAGCAAGGGCTTCCCTTCCATTGAATGGAAAGGATGATGAAGTTAAGTTAATAGAGGAAGAAACCACTAATTTCAAAGATAGTCTTCTTCCTACTGTAATTGGATTGCTTAGAACAGCTAAACTTCCCTCTGTTCTGAGGATCTATCGGGATACACTGACTGCTGATATGAAGAGTGCTATTAAGACTGCTGTTGCTGAGTTGCTTCCAGTTCTTGCTGCTCGAGGTTCAGAATCAGAGTTCTTTTCTGGAGACAGAGCTGTAGATGCAGATGGTGGAGGTGCATCACTTGCTAGCAAGTTACGGAGCCTATCATCTGATTGCTTTGTTCATCTTCTGAGTGCTATTTTCATGATAGTACAGGCACATTTAGTGCGGGCTGCTGAAGTGAAAAAGGCCATTGAATGGATTTTGAGCAACCGTGATGGTCATTATGCTGCTGATTCAGTTGCTGCTGCAATTGCTCATGGTGCTGCAGCTGCAGAAATATCCCAAGAAAGCGAGGTTCATAGTAGCACATTTTTGCCATATTCACCACAAAGAAGTGTTGCCAAGGGTCCTTTTCAGGGGAAAGCAATTGATGCTGTGAGCTCCTCGAACATGTCAAAAAATTTCAGAGCTGATGTATTGCGAGAAAACGCAGAAGCTGTCTTTGCAGCATGTGATGCTGCACATGGAAGATGGGCGAAGCTTCTTGGGGTCCGTGCTGTTCTCCATCCTAGGTTGAAATTGCAGGAGTTTCTAACCATATACAACATCACCCAGGAGTTCATTACTGCTACAGAAAAAATTGGTGGAAGATTGGGATACAGCATTCGTGGAACACTGCAGTCACAGGCCAAGGCTTTTGTTGATTTTCAGCATGAATCTCGGATGGCAAAAATTAAGGCAGTGCTTGACCAGGAAACATGGGTGGAGATAGATGTCCCTGATGAATTTCAATCCATCATCATTATGCTCTTTTCATCTGATGCATTGACTCCTGGGAACCTTAATGGTTCTGAGGAAGATAATTCAAACAGTTACAATGGTATGGTGACTAACAATGATGTTCTGCCAATGGCGGATGCTGGACAGTCAAATGCTGAACAGCAAGTTGAGCTGACTAATTCCACTGAATCATCTATGAAAAATGCAACAATGGATAGATCCAAACCCCTTGTTGACTCAATGGATCCAAATAGAGGTCACAGTAGGATTTCATCGGCACCGAGTAATAATACTGAGAAAGACCATAAAAAATCTGCGTCTCAGACTCTTTTCTACAAAGGTGTTGGTTATCACATGGTAAACTGTGGCTTAATATTGCTGAAGATGTTGTCAGAATACATTGATATGAACAACCTTTTGCCAACACTATCTTCAGAAGTTGTTCATCGTGTAGTGGAAATCTTGAAGTTTTTCAATACAAGAACATGTCAACTTGTGCTTGGGGCTGGGGCAATGCAGGTGTCTGGTTTGAAGTCCATCACCTCTAAACACCTGGCGTTGGCAAGTCAAGTCATTAGTTTTATACATGCTATTATTCCCGAAATTCGGCAGATTCTTTTTCTGAAAGTACCGGAGACTAGAAAGTCATTATTGCTTTCGGAGATTGATCGAGTCGCTCAGGATTATAAGGTCCACAGAGATGAAATACATACCAAATTAGTTCAGATAATGCGAGAAAGATTACTAGTCCATTTACGTGGGTTGCCTCAAATTGTTGAGAGTTGGAATAGACCTGAGGATGCTGACCCCCAACCTAGTCAATTTGCTCGGTCCCTTACAAAGGAAGTTGGATACCTCCAACGTGTTCTATCTCGAACTTTGAATGAAGAAGATGTTCAAGCGATTTTCAGGCAAGTGGTCGTTATATTTCACTCACAAATTTCAGAAGCATTTTCAAGATTTGACATAAGCACTTCCCAAGCACAGAATAGGCTATATCGGGACATTAAACACATTCTTCAATGCATACGGTCATTGCCATCCGGTGATTTAAGTAAATCTGATACCCCAAATTGGGGTCAGCTGGATGAATTTTTGGTGCAAAAATTTGGGACTGATGCTGTTCAGTAA 3051 0.453 MDSQPSQQSWGRSPTLSHHHPLNRTTSSTSSSSPSFSKSNSDSIQSLSSILNNPLSSTTFSSPEFAPIVSSKAASEVSRSDFLPYLSAISDPYHRFDDIRKHSTKEIAADVDGAGEALVACLREVPALYFKEDFRLEDGATFRAACPFSSISENSMLQEKLSQYLDVVELHLVKEISLRSSSFFEAQGQLQDLNAKIVEGCSRIRHLKDTVRLIDSDLVESARQIQQLNATRTNLLALLQKLRLILYVNQALSALKLLVASADCAGALDVTDDLQHLLDGDELTGLHCFRHLRDHVIGFIESINSILSAEFIRASLQDAAETDAIILSKAKARASLPLNGKDDEVKLIEEETTNFKDSLLPTVIGLLRTAKLPSVLRIYRDTLTADMKSAIKTAVAELLPVLAARGSESEFFSGDRAVDADGGGASLASKLRSLSSDCFVHLLSAIFMIVQAHLVRAAEVKKAIEWILSNRDGHYAADSVAAAIAHGAAAAEISQESEVHSSTFLPYSPQRSVAKGPFQGKAIDAVSSSNMSKNFRADVLRENAEAVFAACDAAHGRWAKLLGVRAVLHPRLKLQEFLTIYNITQEFITATEKIGGRLGYSIRGTLQSQAKAFVDFQHESRMAKIKAVLDQETWVEIDVPDEFQSIIIMLFSSDALTPGNLNGSEEDNSNSYNGMVTNNDVLPMADAGQSNAEQQVELTNSTESSMKNATMDRSKPLVDSMDPNRGHSRISSAPSNNTEKDHKKSASQTLFYKGVGYHMVNCGLILLKMLSEYIDMNNLLPTLSSEVVHRVVEILKFFNTRTCQLVLGAGAMQVSGLKSITSKHLALASQVISFIHAIIPEIRQILFLKVPETRKSLLLSEIDRVAQDYKVHRDEIHTKLVQIMRERLLVHLRGLPQIVESWNRPEDADPQPSQFARSLTKEVGYLQRVLSRTLNEEDVQAIFRQVVVIFHSQISEAFSRFDISTSQAQNRLYRDIKHILQCIRSLPSGDLSKSDTPNWGQLDEFLVQKFGTDAVQ. 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03592 1016 PANTHER VACUOLAR PROTEIN SORTING 54 5 979 IPR039745 GO:0000938|GO:0042147
Seca6g03592 1016 MobiDBLite consensus disorder prediction 660 744 - -
Seca6g03592 1016 Gene3D - 855 894 - -
Seca6g03592 1016 MobiDBLite consensus disorder prediction 1 43 - -
Seca6g03592 1016 Pfam Vps54-like protein 757 887 IPR012501 GO:0042147
Seca6g03592 1016 MobiDBLite consensus disorder prediction 660 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03592 Seca-Chr6 103224535 103244281 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03592 K17600 - gmx:100804432 1601.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03592 6 103224535 103244281 Seca6g03592 6 103224535 103244281 ECH