Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03590 ATGGAAGTGCCTCCGGAGCAATCAGGCGAAGAGGTAAAACCAGAAAAGCCTCGAGTTCCCGAGAAGAAGAACATTCCAGAAGGTGCGAAAGGAACAACGAAAACCGCCGTGAACTCTGGTGCTTCGGTTTCTGCGAGGAAAAAAGTGGAGCCTCGAAACGGTTCGGATTCTGGTTCGAGTACGAAGAGATCAGGTTCGATTGGCGGTTCAGTTTCTGCAGTGAGACGAAATAGCACCGGCGGATTGCTCCAGAAACCGTCGATCTCCGATGGAAGAAAGAAAACTAGTGCCGAATCTGCTGCCCGCGCTAAGAGCAGCGCTTCGTCGGTCACTGAACCTGTTCGGAGGTCTCTTCCAGAGCTCCGGCGCAGTTCGATAACTTCTGCTCGTGCTGGCTTGGCCGACAAGCCAGTTGCGGCCTCGCCGGTGGGCCCTGGTTCGAGGACGTCTGCTGCCACTGGCGCAAGTAAGGTGGAAGTTGCGAAGAAGCCTTTGAGTAAGCCGTCACTGTCGACTTCAGCTTTTTCTTCGTCGAGGAGGATTGGTTCTTCAGTGGTTGATAGTAGTGGTGGCGGAGGTTCTGCTAGGAAGACGGTTTCGAAGGTTTCGTCGCCGTCATCATCGTCGTTACGGTCACCGACTGTTTCCAGCGGGTTGAGAACAGGGTCTTTGTCTTCGTCGACGTCAAAGGATAGGAGTTCGACCACTATGTCTGGAAGGAGGAAAGTGGCAACTCCTGATAGCCGCGATTCCCGGTTTATTGTTCTTCCGCAGATTGAGATTAAGGCCAATGATGATGTGAGATTGGATCTGAGGGGACACAGAGTTCGTAGTCTCAATGCCAGTGGATTAAACTTATCCTCAAACTTAGAGTTCGTATATCTCCGAGACAATCTCTTGTCTACACTGGAAGGAGTAGAAGTATTGACAAGAGTGAAGGTTCTTGATTTGAGTTTTAACGATTTTAAGGGGCCTGGATTTGAGCCTCTTGAGAATTGCAAAGTACTGCAGCAACTCTATCTTGCTGGAAATCAAATCACATCATTGGCAAGTCTCCCGCAGCTTCCTAATTTGGAGTTCCTCTCAGTAGCTCAAAATAAGTTGAAATCTCTCGCTATGGCAAGTCAACCTCGACTCCAGGTCTTAGCTGCCAGCAAAAACAAAATTTCTACACTTAAGGGTTTCCCATATTTACCAGTTCTTGAGCATTTGCGAGTGGAGGAGAACCCAATACTTAAGATGCCTCATTTGGAAGCAGCCTCGATATTGCTAGTTGGGCCTACATTGAAAAGATATAACGATAGAGATCTTTCTCGTGAGGAAATTGCAATAGCAAAGCGTTATCCTGCACATTCAGCTTTATGCATTAGAGATGGTTGGGAATTTAGTCGCCCTGAGCATGCTGCAGAGTCAACTTTCCACTTTCTAGTTGAGAAATGGAAGGACCATATTCCTCCTGGGTTTTTTCTGAAAGAAGCTTCAATAGATAAACCTTTGGAAGAAGATGTGTGCCGCTGTCACTTCACAATTATTAATGATGGTGCCGTGAGTGCAGACCCACCATTAGTTTTAAAATATCAATGGTTTTGTGGTGATATAACACTTTCAAATTTTCTCCCTATTCCAGATGCTACCAGCGAGATTTACCTGCCAAAGCATGATGACATTGGAAAAGTTCTGAAAGTGGAATGTACTCCTATTTTAGGAGAAATAGAATATCCTCCTATATTTGCCATCTCTTCTCGTGTTTCACCAGGGAGTGGAATTCCAAAGGTTGTAAACCTTGAGGTGCATGGGGAGCTGGTAGAAGGAAGTATTATCAGGGGTTGTGCTAAGGTTGCATGGTGCGGTGGGACTCCAGGAAAAGGTGTTGCTAGTTGGTTGCGGAGAAAGTGGAACAGCAGTCCTGTGGTCATTGTTGGGGCAGAAGATGAGGAGTATCAGCTAACCATTGATGATGTTGATTCAAGTTTAGTTTTCATGTACACACCAGTAACAGAAGAAGGTGCCAAAGGAGAACCTCAATATAAATATACAGATTTTGTTAGAGCTGCTCCTCCTTCAGTGAGTAATGTTAGAATAGTTGGAGATGCTGTTGAAGGAAATACCATCAAAGGAGTCGGTGATTATTTTGGTGGAAGGGAGGGTCCCAGCAAGTTTGAATGGTTACGGAAGAACAGGGATGTTGGAGACTTGCTGTTAGTGTCAGCTGGTACATCTGAGTACACCTTGGCCAAAGAGGATGTTGGTTGTTGTTTGGCTTTTGTATACATACCAATTAATTTTGAAGGTCAGGAAGGAAAATCTTTGTCAGTAATGTCTCCTGTCGTGAAACAAGCACCCCCAAAAGTATCAAATGTGAAAATAATTGGTGATCTTCGAGAGAATAGCAAGATCACTGCAACTGGTGTTGTAACTGGAGGAACTGAGGGATCTAGCAGAGTTCAGTGGTATAAAACATGTTCATCAACTTTGGATGAAAACAGTCTTGAAGCATTGAGCACTTCCAAAATTGCTAAAGCATTCCGCATACCTCTTGGAGCTGTTGGCTATTACATTGTTGCAAAATTTACGCCAATGACTCCTGATGGTGATGCTGGTGAACCAGCATTTGTAATATCAGATAGAGCAGTTGAGACTCTTCCCCCGAGCTTGAATTTCTTATCTATCATGGGAGATTACTGTGAAAGTGGAATATTGACAGCTTCATATGGATATGTTGGGGGTCACGAAGGAAAAAGTATATACGATTGGTATATTCATGAGGTGGAAGGTGATTTTGGTTCTTTGATACCAGGTGTTTCTGGTCTTCTGCAGTATCGGATTACGAAAGAAGCCATTGGAAAATTCATCTCTTTCCAGTGTACACCAGTACGGGATGATGGTGTTGTAGGTGACCTCAGAATATGCATGGGCCAGGAGCGCGTTCGCCCTGGCAGCCCGAGATTGCTTTCTTTACACATAGATGGAAATGCTGTTGAGGGAACAACACTAAGAATTGAAAAAATGTATTGGGGTGGTGAAGAGGGAGATTCAGTTTACCGCTGGCTTAGGTGGCTGAGGCAATGGTTTGATATTCAACTTCGGCACTCAATCTTGTGA 3102 0.4507 MEVPPEQSGEEVKPEKPRVPEKKNIPEGAKGTTKTAVNSGASVSARKKVEPRNGSDSGSSTKRSGSIGGSVSAVRRNSTGGLLQKPSISDGRKKTSAESAARAKSSASSVTEPVRRSLPELRRSSITSARAGLADKPVAASPVGPGSRTSAATGASKVEVAKKPLSKPSLSTSAFSSSRRIGSSVVDSSGGGGSARKTVSKVSSPSSSSLRSPTVSSGLRTGSLSSSTSKDRSSTTMSGRRKVATPDSRDSRFIVLPQIEIKANDDVRLDLRGHRVRSLNASGLNLSSNLEFVYLRDNLLSTLEGVEVLTRVKVLDLSFNDFKGPGFEPLENCKVLQQLYLAGNQITSLASLPQLPNLEFLSVAQNKLKSLAMASQPRLQVLAASKNKISTLKGFPYLPVLEHLRVEENPILKMPHLEAASILLVGPTLKRYNDRDLSREEIAIAKRYPAHSALCIRDGWEFSRPEHAAESTFHFLVEKWKDHIPPGFFLKEASIDKPLEEDVCRCHFTIINDGAVSADPPLVLKYQWFCGDITLSNFLPIPDATSEIYLPKHDDIGKVLKVECTPILGEIEYPPIFAISSRVSPGSGIPKVVNLEVHGELVEGSIIRGCAKVAWCGGTPGKGVASWLRRKWNSSPVVIVGAEDEEYQLTIDDVDSSLVFMYTPVTEEGAKGEPQYKYTDFVRAAPPSVSNVRIVGDAVEGNTIKGVGDYFGGREGPSKFEWLRKNRDVGDLLLVSAGTSEYTLAKEDVGCCLAFVYIPINFEGQEGKSLSVMSPVVKQAPPKVSNVKIIGDLRENSKITATGVVTGGTEGSSRVQWYKTCSSTLDENSLEALSTSKIAKAFRIPLGAVGYYIVAKFTPMTPDGDAGEPAFVISDRAVETLPPSLNFLSIMGDYCESGILTASYGYVGGHEGKSIYDWYIHEVEGDFGSLIPGVSGLLQYRITKEAIGKFISFQCTPVRDDGVVGDLRICMGQERVRPGSPRLLSLHIDGNAVEGTTLRIEKMYWGGEEGDSVYRWLRWLRQWFDIQLRHSIL. 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03590 1033 Gene3D Ribonuclease Inhibitor 258 326 IPR032675 -
Seca6g03590 1033 Gene3D Ribonuclease Inhibitor 327 453 IPR032675 -
Seca6g03590 1033 Gene3D - 509 572 - -
Seca6g03590 1033 FunFam Predicted protein 238 418 - -
Seca6g03590 1033 SUPERFAMILY Outer arm dynein light chain 1 268 422 - -
Seca6g03590 1033 SMART LRR_sd22_2 309 332 - -
Seca6g03590 1033 SMART LRR_sd22_2 287 308 - -
Seca6g03590 1033 SMART LRR_sd22_2 355 376 - -
Seca6g03590 1033 SMART LRR_sd22_2 333 354 - -
Seca6g03590 1033 PANTHER EXPRESSED PROTEIN 662 769 - -
Seca6g03590 1033 MobiDBLite consensus disorder prediction 166 242 - -
Seca6g03590 1033 MobiDBLite consensus disorder prediction 1 247 - -
Seca6g03590 1033 MobiDBLite consensus disorder prediction 1 28 - -
Seca6g03590 1033 ProSiteProfiles Leucine-rich repeat profile. 335 356 IPR001611 GO:0005515
Seca6g03590 1033 MobiDBLite consensus disorder prediction 54 90 - -
Seca6g03590 1033 ProSiteProfiles Leucine-rich repeat profile. 289 310 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03590 Seca-Chr6 103167077 103181895 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03590 - - gmx:100807099 1581.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03590 6 103167077 103181895 Seca6g03590 6 103167077 103181895 ECH