Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03589 ATGAACTTCAGATTCCAGAACCTTCTGGGAGCTCCCTACAGGGGTGGCAACGCCATCATCTCGAACAACACCCTGCTACTCTCACCCGTCGGTAACCGAGTGTCCGTCACCGACCTCCTCAAGTCCGAAACCACTACCCTCCCCGTCCAATCCTCCTCCAACATCTCCCGCATCGCCGTCTCCCCCGACGGCACCTTCCTCCTCACCGTCGATGACCGTAACCGCTGCCTCTTCATCAACCTCCGCCGCCGCGCCCTCCTCCACCGCATCTCCTTCAAGCACCGCGTCGCCGCCGTCAAATTCTCCCCTGACGGAAACTTCATCGCCGTCGCCGCCGGAAAACTCGTCCAGATCTGGCGCTCCCCTGCCTTCCGCAAGGAATACTTCCCCTTCGAGCTGGTTCGGACCTTCGCCGAATTCGACGCCAAAATCACCTCCTTCGATTGGAGCCCTGATTCCACCTACTTGCTCGTTGGGTCCAAGGACCTCACCGCCAGAATCTTGTGCTTGAAGAAACTGAGTAACGATGCCAAGTACAGGCCTTTCTTATTTTTAGGTCACCGGGATTCGGTTATAGCTGCGTTCTTCGGCGTTGATTCAAAAACTAATAGGGTTTGTAAGGCTTATACGGTTGCCAGGGATGGCTATTTGTTTAGCTGGGGTTTTTCTGGCGATGAAGGATCAGCGCCACCATCGCCGGGGACTCCGGATAGGGATTTGGAAGGGAATTTGATGATTGAGGACAATGGTGATGCGAAGAAGAGGAAGGAACGTGAAATTGAAGATGATGATGAAGGGTACTTGTGCAGAGGGAAGTGGGAGCTGTTGAGGAAGGATAGTTTTACGCAGGGGAAGGTGACAGCGTGTGATTATCATAGAGGGCTGGATATGGTGGTTGTTGGATTCTCTAGTGGTGTGTTTGGGTTGTATCAGATGCCGGAGTTTGTGTGCATTCATATGTTGTCTATATCTAGGGAGAAGATCACCACTGCACTGTTTAATGAGCTTGGGAACTGGTTGACCTTTGGATGCGCCAAACTGGGCCAGCTCCTTGTGTGGGAGTGGCGGTCCGAGAGCTATATATTGAAGCAACAGGGTCATTACTTTGATGTCAATTGTGTTGCATATTCGCCCGATTCCCAACTCCTTGCTACTGGAGCAGATGATAATAAAGTGAAGGTGTGGACTGTTTCCTCGGGCTTTTGCTTTGTTACATTTTCTGAGCACACCAATGCTGTTACGGCACTGCATTTCACAGCAAGTAACAATTGCCTGCTCAGTGCATCTCTTGATGGGACTGTTCGAGCATGGGATTTATTACGTTATCGAAATTTTAGGACGTTTACAACCCCTACTTCAAGACAGTTTGTTTCGCTGGCAGCAGATCAAAGTGGTGAAGTGATATGTGCTGGCACTTCAGATTCCTTTGAGATTTTTGTTTGGTCAATGAGAACTGGCCGTTTGTTGGATGTGCTTAGCGGTCATGAAGCTCCTGTTCATGGGCTGATGTTTTCTCCTACAAATGCTATCTTGGCTTCATCATCATGGGACAAAACTGTTCGATTGTGGGATGTCTTTGATGGAAAAGGAGCAGTTGAAACGTTGATTCACACACATGATGTTCTCACAATAGTTTATCGTCCAGATGGAAGGCAGTTAGCTTGCAGCACATTAGATGGGCAAATTCATTTTTGGGATCCGATAGATGGTTTGCTGATGTATACCATAGAAGGTTCTAGAGATATTGCTGGGGGTCGTCTTATGACTGACCGTAGATCAGCTGCTAACTCAAGTTCAGGGAAGTGTTTCACAACCTTGTGTTATTCTGCTGATGGAAGCTATATATTAGCTGGGGGCAGTAGCAGATATATCTGCATGTATGATGTTGCAGATCAGGTATTGCTGCGACGTTTCCAGATTACTCACAATCTCTCATTAGATGGAGTGCTTGATTTCTTAAACTCGAAGAATATGACAGAAGCTGGCCCACTAGATTTGATTGACGACGACAACAGTGACATTGAAGAAGGTGTTGAAAAACAAACACGGGGGAAAATAGGATTAGATTTACCAGGATCCATGTCTAACCATGGAAGACCTGTTATTCAAACAAAATGCCTGAGAATTGCACCTACTGGGCGGAGTTTTGTTGCAGCAACGACTGAGGGAGTTTTAGTTTATTCTGTTGATGAATCATTTATATTTGATCCAACTGACCTGGACATAAATGTTACACCAGAGGCCGTTGATGAAGCTCTTAATGAAAATCAACCAAGCAGAGCTTTGATCCTTAGCCTTCGCCTAAACGAGGACTCTTTCATTAAAAAATGTATTTTTTCTGTTAGTCCCGCAGATATTCCAGCAATTGCCACATCAGTCCCTCACAGATATCTCCAGCGATTAATTGAGGCACTTGCAGATCTTCTAGAAAATTGCCCACATTTGGAATTTATACTCAGATGGTGTCAGGAGCTCTGCAAAGCCCATGGGAATTCTATTCAGCAGAACTCTAGAAATCTGCTCCCGTCGTTAAAATCATTGCAGAAAGCAATCACTACAATACATGAGGATCTAGCTGACACATGTTCCTCCAATGAATATATGCTGCGATATTTATGCTCTTCTGGTATCAAGAAATAA 2640 0.4648 MNFRFQNLLGAPYRGGNAIISNNTLLLSPVGNRVSVTDLLKSETTTLPVQSSSNISRIAVSPDGTFLLTVDDRNRCLFINLRRRALLHRISFKHRVAAVKFSPDGNFIAVAAGKLVQIWRSPAFRKEYFPFELVRTFAEFDAKITSFDWSPDSTYLLVGSKDLTARILCLKKLSNDAKYRPFLFLGHRDSVIAAFFGVDSKTNRVCKAYTVARDGYLFSWGFSGDEGSAPPSPGTPDRDLEGNLMIEDNGDAKKRKEREIEDDDEGYLCRGKWELLRKDSFTQGKVTACDYHRGLDMVVVGFSSGVFGLYQMPEFVCIHMLSISREKITTALFNELGNWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFSEHTNAVTALHFTASNNCLLSASLDGTVRAWDLLRYRNFRTFTTPTSRQFVSLAADQSGEVICAGTSDSFEIFVWSMRTGRLLDVLSGHEAPVHGLMFSPTNAILASSSWDKTVRLWDVFDGKGAVETLIHTHDVLTIVYRPDGRQLACSTLDGQIHFWDPIDGLLMYTIEGSRDIAGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSRYICMYDVADQVLLRRFQITHNLSLDGVLDFLNSKNMTEAGPLDLIDDDNSDIEEGVEKQTRGKIGLDLPGSMSNHGRPVIQTKCLRIAPTGRSFVAATTEGVLVYSVDESFIFDPTDLDINVTPEAVDEALNENQPSRALILSLRLNEDSFIKKCIFSVSPADIPAIATSVPHRYLQRLIEALADLLENCPHLEFILRWCQELCKAHGNSIQQNSRNLLPSLKSLQKAITTIHEDLADTCSSNEYMLRYLCSSGIKK. 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03589 879 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 447 IPR001680 GO:0005515
Seca6g03589 879 Gene3D - 270 475 IPR015943 GO:0005515
Seca6g03589 879 PANTHER WD40 REPEAT PROTEIN 1 876 IPR027145 -
Seca6g03589 879 Gene3D - 476 661 IPR015943 GO:0005515
Seca6g03589 879 SUPERFAMILY DPP6 N-terminal domain-like 8 226 - -
Seca6g03589 879 ProSitePatterns Trp-Asp (WD) repeats signature. 425 439 IPR019775 -
Seca6g03589 879 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 533 IPR001680 GO:0005515
Seca6g03589 879 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 534 566 - -
Seca6g03589 879 SUPERFAMILY WD40 repeat-like 128 572 IPR036322 GO:0005515
Seca6g03589 879 CDD WD40 317 620 - -
Seca6g03589 879 FunFam Periodic tryptophan protein 2 444 642 - -
Seca6g03589 879 ProSitePatterns Trp-Asp (WD) repeats signature. 511 525 IPR019775 -
Seca6g03589 879 ProSiteProfiles Trp-Asp (WD) repeats profile. 534 566 IPR001680 GO:0005515
Seca6g03589 879 Pfam WD domain, G-beta repeat 365 395 IPR001680 GO:0005515
Seca6g03589 879 Pfam WD domain, G-beta repeat 487 524 IPR001680 GO:0005515
Seca6g03589 879 Pfam WD domain, G-beta repeat 134 167 IPR001680 GO:0005515
Seca6g03589 879 Pfam WD domain, G-beta repeat 402 438 IPR001680 GO:0005515
Seca6g03589 879 Pfam WD domain, G-beta repeat 538 566 IPR001680 GO:0005515
Seca6g03589 879 Gene3D - 21 228 IPR015943 GO:0005515
Seca6g03589 879 Pfam Dip2/Utp12 Family 769 874 IPR007148 -
Seca6g03589 879 SMART WD40_4 83 120 IPR001680 GO:0005515
Seca6g03589 879 SMART WD40_4 399 438 IPR001680 GO:0005515
Seca6g03589 879 SMART WD40_4 485 524 IPR001680 GO:0005515
Seca6g03589 879 SMART WD40_4 528 566 IPR001680 GO:0005515
Seca6g03589 879 SMART WD40_4 130 169 IPR001680 GO:0005515
Seca6g03589 879 SMART WD40_4 272 311 IPR001680 GO:0005515
Seca6g03589 879 SMART WD40_4 589 628 IPR001680 GO:0005515
Seca6g03589 879 SMART WD40_4 45 80 IPR001680 GO:0005515
Seca6g03589 879 SMART WD40_4 357 396 IPR001680 GO:0005515
Seca6g03589 879 SMART WD40_4 314 354 IPR001680 GO:0005515
Seca6g03589 879 SMART WD40_4 441 482 IPR001680 GO:0005515
Seca6g03589 879 SUPERFAMILY WD40 repeat-like 537 730 IPR036322 GO:0005515
Seca6g03589 879 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 439 - -
Seca6g03589 879 ProSiteProfiles Trp-Asp (WD) repeats profile. 364 405 IPR001680 GO:0005515
Seca6g03589 879 FunFam Periodic tryptophan protein 2 22 243 - -
Seca6g03589 879 PRINTS G protein beta WD-40 repeat signature 425 439 IPR020472 -
Seca6g03589 879 PRINTS G protein beta WD-40 repeat signature 383 397 IPR020472 -
Seca6g03589 879 PRINTS G protein beta WD-40 repeat signature 511 525 IPR020472 -
Seca6g03589 879 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 525 - -
Seca6g03589 879 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 364 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03589 Seca-Chr6 103148246 103155232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03589 463 744 Miscellaneous Gene Families AT5G08390 20.415 7.06e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03589 K14558 - gmx:100793629 1558.89