Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03588 ATGGAGGAGGAGGAAGATAAGCAGAGAGCAGTGAGAATATTCGTGGGAGGATTGGGCGAAGGCATCAGTGGTGAAGATCTTCGCAGATTATTTGGGTCTCTGGGCACCGTTCAAGCACTCGAAACAATCCGAACCAAAGGTCGCAGTTTTGCATACCTCTCCTTCCTCCCCTCTCCTTCCGATCCCAAATCGCTTTCCAAGCTTTTTAGCAAGTATAATGGATGTGTGTGGAAGGGTGGAAAGCTGAAACTTGAAAAAGCTAAAGAGCATTACCTTGTGCGTTTGAAAAGAGAATGGGAAGAAGATGCTCTTCTTAATAGCCAACCACCAACTTCTAATCCTTCTACTCACAAGGACTTGGAGGAAATGCCCAACACGAGAAGCACTTCAAATTCAAATACGAAACACCTCAATATTTTCTTTCCCAGATTAAGAAAGGTGAAATCCATACCATTCAGTGGAACTGGCAAGCACAAATACAGTTTCCAGAATATCAAAGTTCCTTCTCTCCCTGTACATTTTTGTGATTGTGAGGAACATTGTAGTCCTTTAGTCACAGAAAGAGAAAAGACATCTTTTGGTGGGGCAGGAGAAATAGGTGTAATGAATGATGAAGAAATTAACATAATGAATGCTGTGATGAACAAGCTATTTGAAAAAGAAAATGTTTCCAACACTAAGTATCTTGGAAAGGAGCAGGATTCTTTCGAATCACCTGATGCTTTACATTTTAATGAGTGTGAAGAAGATAGTGCAACAGATGATGATGGTCTCATAATTAACATGGAGACGAATAAAAATAAATCAGCTTTAAAAGGAAGCCAGGAACTTGAAAGGATCATGGAAAACCAGGCATGGTTGAATAAAACAAGAATTGATAAGGAAGAAAAACCAAACAAAAGTATGCTTCAAGCCCAGAAAAGGAGTAACAATGTCAAGAAGAGAAAATCACTTTCCAAATTGGAAAGTGAAAGCAACGGGTGTGTGTCTACTACCCCTGGAGGCAAGAGTAATATGCAGACCCTTCCGAATGAGCTGGGATCTAGTGCACAACCAGCTGAGCTAGAATATGATTTTGGGGAATCCACTAAAGTTTCATGGTCTCAGAAGTCGTCATGGAGAGAACTTCTTGGTGAAGGAGGCAATACTGCTTTCAGTGCCTCTCTCATATTGCCAAAGTCAGACTCTGGTAAAGATGAACAAGGATCTGATGGTCCTTCCACACCCTTATCTACAAACGACAAAACTGAAAACATGGAAAGGGATGGATGCCTAGGGAGCAAACCTACCAATACAACAGAAGTGATAAAAGAGACTGCTGAAGCTGAACCTGCCAATAAATTAGTAATAAATGAGATTGCTGAAGCTCAGCACAACGTGGGACCAAATAAGACTGGCAGAGGTGCTTCGTGGCTGCAAAAGCAATCCTGGACACAACTGGTTAATGAGAATAATAATTTGTTTAGCATTTCACAAATTTTACCTGGCATTACTTTCCCAGAGCCAATGGCCAAGGAGCCCCTTGTGGACCCTGCCAATTCCAATGATGGCAAGCACAATGGTGTAGATAATGATACTATTAATGAAACTGTCAGTGATGGGTTTAACTTAGTGGAGATTATACCAGAGAAGAGCCAGCATGGTGGTCCCACTGATATTGCTTCTGCTCCAGTAGTTGAGAAAAAATTGGAAACAAGTCCAAGGGAAAGATCAACTGCAGATGTTGAAATAGGCGAAACTTGCTCATTTATGAGAAGTGCTGCTTCTTTGAAAGAATGGGCAAAAGCTAAGGCTGCTCTTAGTGGATCGCTCAAAAGAAAGCGTGGTGAGAAGTAA 1836 0.4139 MEEEEDKQRAVRIFVGGLGEGISGEDLRRLFGSLGTVQALETIRTKGRSFAYLSFLPSPSDPKSLSKLFSKYNGCVWKGGKLKLEKAKEHYLVRLKREWEEDALLNSQPPTSNPSTHKDLEEMPNTRSTSNSNTKHLNIFFPRLRKVKSIPFSGTGKHKYSFQNIKVPSLPVHFCDCEEHCSPLVTEREKTSFGGAGEIGVMNDEEINIMNAVMNKLFEKENVSNTKYLGKEQDSFESPDALHFNECEEDSATDDDGLIINMETNKNKSALKGSQELERIMENQAWLNKTRIDKEEKPNKSMLQAQKRSNNVKKRKSLSKLESESNGCVSTTPGGKSNMQTLPNELGSSAQPAELEYDFGESTKVSWSQKSSWRELLGEGGNTAFSASLILPKSDSGKDEQGSDGPSTPLSTNDKTENMERDGCLGSKPTNTTEVIKETAEAEPANKLVINEIAEAQHNVGPNKTGRGASWLQKQSWTQLVNENNNLFSISQILPGITFPEPMAKEPLVDPANSNDGKHNGVDNDTINETVSDGFNLVEIIPEKSQHGGPTDIASAPVVEKKLETSPRERSTADVEIGETCSFMRSAASLKEWAKAKAALSGSLKRKRGEK. 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03588 611 CDD RRM_NOL8 12 88 IPR034138 -
Seca6g03588 611 SMART rrm1_1 12 85 IPR000504 GO:0003723
Seca6g03588 611 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Seca6g03588 611 MobiDBLite consensus disorder prediction 544 574 - -
Seca6g03588 611 MobiDBLite consensus disorder prediction 103 134 - -
Seca6g03588 611 PANTHER TRANSCRIPTIONAL REGULATOR 1 610 - -
Seca6g03588 611 MobiDBLite consensus disorder prediction 392 430 - -
Seca6g03588 611 MobiDBLite consensus disorder prediction 322 346 - -
Seca6g03588 611 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 55 IPR000504 GO:0003723
Seca6g03588 611 MobiDBLite consensus disorder prediction 105 134 - -
Seca6g03588 611 Gene3D - 1 91 IPR012677 -
Seca6g03588 611 MobiDBLite consensus disorder prediction 289 346 - -
Seca6g03588 611 SUPERFAMILY RNA-binding domain, RBD 6 88 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03588 Seca-Chr6 103134939 103138405 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03588 - - gmx:100808161 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03588 6 103134939 103138405 Seca6g03588 6 103134939 103138405 ECH