Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03579 ATGGGATTTGTGGGTGTGTGGAGCTTAGGAGGTGAGAGCACGAAAACCTCCTGGAGTCTTTCAACAGACACGTCTTCTAGTAATAGAGGCGCCATTGCCATCAAAATTCGATCAATGTCGTCATCCTCGAAGTCACTAGTGAGACATGCCATGGATATATGCAAGGAAGTGCTCGATTACGTTGTTGATGGATTCACAAGTCTGTTGAGACACTGGACAAGTTCTAAGTCAGCAAGTTGGGCTTTTGATAATGGCCTTGGAATTGTCAAACCAAACGTAGTTGTGGTTGAAGATGAAAATGAACATAGGGTCAACATCGTCTTCTTCAGGCTTTCTGATAATGGCCCTGGAATCGTCAAACCAAACGTAGTTGTGGTTGAAGGGTATACGAATATGGATCACCATGATGATGAATGCCGCACCGGAGGTGAAAGTAACAGCAGACAAGATGATGAGGAAGCTGTTGCGCACCTCGAGGAAATTAAAAAATCTATTGAGGCAAAGATGGCTTTACGTCAAAGCAATTTGAATCCCGACAGGCCTGACTCAGGATTTTTAAGAACATTGGATTCTAGCATTAAGCGCAACACTGCAGTCATTAAGAAACTGAAGCAGATTAATGAAGAGCAGCGTGAAGCACTGATGGATGAGTTGCGAAGTGTCAACTTAAGTAAATTTGTCAGTGAAGCAGTGACAGCTATATGTGATGCCAAGCTTAGAAGTTCTGATATACAAGCAGCAGTTCAGATCTGCTCTTTGCTTCATCAAAGGTACAGGGACTTCACGCCAAGCCTGATTCAAGGGCTTCTCAAAGTCTTCTCCCCTGGAAAACCTGGTGATGAATCAGATGCAGACAGAAATTTGAAGGCAATGAAGAAGCGCAGCAGTCTGAAACTTCTTTTGGAACTTTTTTTTGTCGGGGTTATTGAAGATGGTGCCATTTTTATCAATATCATTAAAGATCTTACCAGTGTGGAACAGCTAAAAGATCGGGATGCTACACAAACAAGTTTGACCCTTCTTTCTAGCTTTGCTCGGCAAGGGAGAATTTTTCTAGGACTTTCTGTTACTGGGCCTGAAATTCATGAAGAGTTTTTTAAAGGCCTTAACGTCACGGCAGATCAAAAGAAAGTTTTCCGGAAAGCATGTTATGCATTTTATGATGCTGCAGCTGAACTACTTCAGTCTGAGCATTCCTCACTTCGATTAATGGAGCATGAAAATTCTAAGATTTTGAATGCAAAAGGAGAGCTCAGTGATGAAAATATTGCTTCATATGAAAAGCTTCGTAAATCTTATGACCATTTGTACCGTAATGTCTCATCATTAGCAGAAGCACTTGATATGCAGCCTCCAGTAATGCCTGAGGATGGCCACACAACAAGGGTTACTAGTGGTGAGGAGGCTATTTCTTCTGCTGCTGGGAAAGATTCTTCCGTTGTTGAACCCATATGGGATGATGAAGATACAAGGGCTTTCTATGAATGTTTACCTGATCTTAGAGCTTTTGTTCCTGCCGTGCTTTTGGGAGAAACGGAGCCAAAAATCAATGAGCAATCTATGAAGAATCAAGACCAACCAACTATCTCAGAATCGCACGATACCACAATTCTGCACCTCCCTTCTGTGCTGGACAGCAAGCAGAGTCGCACAATCACAGGATCGGAACAGAATCGTGTGTCAGACCGTGAACTTGTACAATCGAACAAGCTGGGCGATCTTTCAGAGGAAATATTACCTGAATCAGACAAAGGTCAACTGATCACCCATGAAGGTGGAGAGGTCTCCACAGACTCTAGTGCTTTTCCAGAGGGAGAAAGCATAGAAAGAGTGAAGGATAAAGAAGAAAAAGAAAAGTCTAAAGAACTGGACAGAGAGAAGGAAAAAGAAAAAGAAAAAGAAAAGGACAGTGAAAAGAAGGGGGAAAATGAAAAGGACAAACTCAGAACTCTTGAAGGGACAAATTTGGATGCTCTATTACAGAGGCTTCCGGGTTGTGTGAGCCGGGACCTTATAGATCAATTAACTGTAGAGTTTTGTTATCTAAATTCAAAATCAAATCGGAAAAAGCTTGTGAGGGCCCTGTTCAATGTACCAAGGACATCTCTGGAACTGCTACCATATTACTCACGCATGGTTGCCACACTCTCAACTTGTATGAAGGATGTCTCCTCCCTTCTATTGCAGATGTTGGAGGAGGAATTCAACTTCTTAATAAATAAAAAGGACCAGATGAACATTGAGACAAAGATAAGGAATATCAGGTTCATTGGAGAACTTTGCAAGTTCAAAATTTCTCCTGCTGGTCTCGTCTTCAGCTGTTTGAAGGCCTGTTTAGATGATTTTACTCATCACAACATTGATGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTGTATCGGTCTCCAGAAACTACAATACGTATGGCCAATATGTTGGAGATACTGATGCGCTTGAAAAATGTAAAAAACTTGGATCCCAGACATAGTACTTTGGTGGAGAATGCATACTACCTTTGCAAGCCACCAGAAAGATCTGCAAGAGTAGCTAAAGTTCGTCCTCCATTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTTGATAAGTCTACCATTGAGCATGTGCTGAGGCAGCTTCGTAAATTACCATGGAGTGAATGTGAACCATATCTTTTAAAATGCTTCATGAAGGTCTACAAAGGCAAATATGGTCAGATCCACCTGATTGCATCTCTTGCTGCTGGGTTAAGTCGCTATCATGATGAGTTCGCTGTAGCTATAGTTGATGAGGTCTTGGAGAAGATTAGAATTGGCCTGGAACTAAATGACTATGGGATGCAGCAAAGACGCATTGCCTACATGCGATTCTTAGGGGAGCTTTACAACTACAAGCATGCAGATTCGTCTGTTATTTTTGAGACACTATATCTCATTCTTGTCTATGGCCATGGGACATCAGAGGATCTGTTTGCTGATCTACGTCCCAATATGGTTCGTTACACTTCTGTTGAGGAAGTGAATGCCGCTCTAGTAGAACTTGAGGAGCATGATCATAAGGCCAGCAGTCAAAAACATTCTGACACTGAGAAGCCTTTAAGTAGGACTACTTCCACCACAGTGGTTGGCAATGGACAGAGCACTGATAATGGGGCAGAGGAAAATGGAGTGCAAGATGATGTTAATGAAGGTGAGCCTGATTCAGGAAGTGACATAAATGATGTGGAAGGACATGATGATGAAGAGTTGGATGAGGAGAATCATGATGGTGGATGTGAGACTGAGGATGATGATGAGGATGAGGATGATGGGCCCGGACCTGCTTCTGATGAGGAAGATGAAGTCCATGTGAGACAGAAGGTGACAGAGGTGGACCCTCTGGAAGAAGCCAATTTTGATCAGGAGCTCAAGGCTGTATTGCAGGCAAGGGAGAGTATGGAACAGCGAAGGCAGGAGCTACGTGGCCGTCCAACATTGAACATGATGATTCCAATGAATGTTTTTGAGGGATCTGGCAAGGATCATCATGGGAGAGGAATTGGTGGGGAAAGTGGTGATGAGGCCCTGGATGAAGATATTGATGGAAACAAAGAGGTTCAGGTGAAAGTTCTTGTGAAGCGTGGGAACAAGCAACAAACAAAGCAAATGTACATCCCACGGAATTCCTCACTGGTTCAGAGTACTAAACAGAAAGAAGCAGCTGAACTTCAAGAGAAAGAAGACATTAAAAGACTTGTCTTAGAGTATAATGATAGAGAAGAGGAGGAGCTTAATGGATTAGGGACCCAGCCAACGAACTGGATGCAGAGTGGAGGTAACAAGGCTGGTGGCCGTGGCAACACTTTGGAAGGAACCAGTGGCAGGAGTGGTGGATCTCGACATCGGCATCATAATTATACTGGTAGTGGAATCTACTATAGCAGAAGAAGGTGA 3939 0.4285 MGFVGVWSLGGESTKTSWSLSTDTSSSNRGAIAIKIRSMSSSSKSLVRHAMDICKEVLDYVVDGFTSLLRHWTSSKSASWAFDNGLGIVKPNVVVVEDENEHRVNIVFFRLSDNGPGIVKPNVVVVEGYTNMDHHDDECRTGGESNSRQDDEEAVAHLEEIKKSIEAKMALRQSNLNPDRPDSGFLRTLDSSIKRNTAVIKKLKQINEEQREALMDELRSVNLSKFVSEAVTAICDAKLRSSDIQAAVQICSLLHQRYRDFTPSLIQGLLKVFSPGKPGDESDADRNLKAMKKRSSLKLLLELFFVGVIEDGAIFINIIKDLTSVEQLKDRDATQTSLTLLSSFARQGRIFLGLSVTGPEIHEEFFKGLNVTADQKKVFRKACYAFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEAISSAAGKDSSVVEPIWDDEDTRAFYECLPDLRAFVPAVLLGETEPKINEQSMKNQDQPTISESHDTTILHLPSVLDSKQSRTITGSEQNRVSDRELVQSNKLGDLSEEILPESDKGQLITHEGGEVSTDSSAFPEGESIERVKDKEEKEKSKELDREKEKEKEKEKDSEKKGENEKDKLRTLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSLLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKISPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWSECEPYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEKIRIGLELNDYGMQQRRIAYMRFLGELYNYKHADSSVIFETLYLILVYGHGTSEDLFADLRPNMVRYTSVEEVNAALVELEEHDHKASSQKHSDTEKPLSRTTSTTVVGNGQSTDNGAEENGVQDDVNEGEPDSGSDINDVEGHDDEELDEENHDGGCETEDDDEDEDDGPGPASDEEDEVHVRQKVTEVDPLEEANFDQELKAVLQARESMEQRRQELRGRPTLNMMIPMNVFEGSGKDHHGRGIGGESGDEALDEDIDGNKEVQVKVLVKRGNKQQTKQMYIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGTQPTNWMQSGGNKAGGRGNTLEGTSGRSGGSRHRHHNYTGSGIYYSRRR. 1313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03579 1312 SUPERFAMILY ARM repeat 654 848 IPR016024 -
Seca6g03579 1312 Gene3D - 855 990 - -
Seca6g03579 1312 FunFam Regulator of nonsense transcripts UPF2 145 455 - -
Seca6g03579 1312 MobiDBLite consensus disorder prediction 541 565 - -
Seca6g03579 1312 SMART if4_15 860 1159 IPR003890 GO:0003723|GO:0005515
Seca6g03579 1312 SMART if4_15 193 415 IPR003890 GO:0003723|GO:0005515
Seca6g03579 1312 SMART if4_15 657 845 IPR003890 GO:0003723|GO:0005515
Seca6g03579 1312 MobiDBLite consensus disorder prediction 1018 1131 - -
Seca6g03579 1312 MobiDBLite consensus disorder prediction 1257 1312 - -
Seca6g03579 1312 Gene3D - 614 851 - -
Seca6g03579 1312 Gene3D - 145 455 - -
Seca6g03579 1312 MobiDBLite consensus disorder prediction 1035 1057 - -
Seca6g03579 1312 MobiDBLite consensus disorder prediction 1058 1111 - -
Seca6g03579 1312 MobiDBLite consensus disorder prediction 1018 1034 - -
Seca6g03579 1312 Coils Coil 611 640 - -
Seca6g03579 1312 MobiDBLite consensus disorder prediction 1261 1290 - -
Seca6g03579 1312 Coils Coil 148 168 - -
Seca6g03579 1312 MobiDBLite consensus disorder prediction 1112 1131 - -
Seca6g03579 1312 Coils Coil 728 748 - -
Seca6g03579 1312 Coils Coil 1138 1158 - -
Seca6g03579 1312 MobiDBLite consensus disorder prediction 541 648 - -
Seca6g03579 1312 MobiDBLite consensus disorder prediction 605 648 - -
Seca6g03579 1312 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 990 1260 IPR039762 GO:0000184
Seca6g03579 1312 FunFam Regulator of nonsense transcripts UPF2 613 853 - -
Seca6g03579 1312 SUPERFAMILY ARM repeat 855 1021 IPR016024 -
Seca6g03579 1312 SUPERFAMILY ARM repeat 209 329 IPR016024 -
Seca6g03579 1312 Pfam Up-frameshift suppressor 2 1112 1250 IPR007193 -
Seca6g03579 1312 Pfam MIF4G domain 862 991 IPR003890 GO:0003723|GO:0005515
Seca6g03579 1312 Pfam MIF4G domain 660 844 IPR003890 GO:0003723|GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03579 Seca-Chr6 103016708 103034781 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03579 K14327 - gmx:100786092 1753.8