Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03080 ATGGCTTCTATCACATGCATCACCCACCAACCCATCACTTCAAGTTCTAAAGCCTCCTTGCCTTCACCACTTTCTTCCTCAAACTTGTCTTCTCGGTTTCTAGGTATCAGAAAAAGAGTTGGGTGGCTCAGACTCACCTCTGAAATTGGACCCTCCAACGGCTCCAAAGCCACATGCTGGTTCAGATTTGGTAAGAATGGTGTTGATGCTGAAGGTGCTGGAATTTATGGCAGCCAGTCCCGTGATGATTTTGATAGAGATGATGTTGAACAGTACTTCAATTATATGGGGATGCTCGCTGTCGATGGATCATATGATAAAATGGAGGCTCTTCTAAGCCAAAACATCCACCCCGTGGACATCCTACTGCTATTAGCTGCCTCAGAAGGTGACAAGCCAAAAATTGAAGAACTCTTGAGAGCAGGAGCAAAATTTGATGTAAAAGATGCAGATGGACGGACAGCACTGGACAGGGCTAATGATGAAATTAAAGATTTCATTCTTAATTTTCAAGTGCAGAGGGCATGA 528 0.4413 MASITCITHQPITSSSKASLPSPLSSSNLSSRFLGIRKRVGWLRLTSEIGPSNGSKATCWFRFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVDGSYDKMEALLSQNIHPVDILLLLAASEGDKPKIEELLRAGAKFDVKDADGRTALDRANDEIKDFILNFQVQRA. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03080 175 FunFam Protein LHCP TRANSLOCATION DEFECT 83 174 - -
Seca6g03080 175 SUPERFAMILY Ankyrin repeat 98 168 IPR036770 -
Seca6g03080 175 PANTHER PROTEIN LHCP TRANSLOCATION DEFECT 1 175 IPR044242 GO:0006886|GO:0009570|GO:0090391
Seca6g03080 175 Gene3D - 79 173 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03080 Seca-Chr6 96893477 96897503 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03080 - - gmx:100499940 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03080 6 96893477 96897503 Seca6g03080 6 96893477 96897503 ECH