Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03075 ATGATCACAGTGCAAGGCAATTCCAAAATAGAAGAAACAACGGCAATAGAAGGAACGGAAGCGGACGCAGCGGATTTGTTTTCAGTGTTTCGCGGGTGCGTGGTGGAAGGTAGATGGGACTATGTGATCGCCGCATATGAAAACAACAGCATATATCACAAGATCAAGATCAATGAAAGCAGGGGAACAGCACTACACGTGGCAGTGAACGATGGGAAATTCGAACTTGTGTACCATTTGGTAGATGCAATCATAGAGCATGAAGGGAATGAGGTGAGGGGTGAGAAGAGTGCGTTTAGGTCAACAAACGAGAGAGGGGACACACCTTTGCATCTTGCTGCTGCGAGAGGGTTCATTGGTATGTGTAAGTGCATCATTGGAGAAAATGGTGAAAGGAAAGATTTGATTAAAGCGATGAATAAGAAGGGTGAGACACCTCTGTTTAGGGCTGTGCTGACGTGTCAGACGCAGTGCTTTGTGTACTTGCACCATGTTTCTAAACATGATTTGGATGTTCCACTTAGGAACAATGATGGGGATAGCATCCTTCACCGTGCCATTCGGAGAGAGTTTTATGATTTGGCAATTATAATAATTCATTGCTATCCTGGACTTGTCGACACACGGAACAAAGATGGAGTCACTCCTCTCAGAACTCTTGCCACTAGATCTTCAGCTTTCAAGAGTGGAAGCAATCTCATGTGGTGGAAGCAAATTATATACCAATGTATAATCGTAGAACCTTTAGACGCTGAAAAAGCAATGAAGTCATATTTGGAGACAACAATAGATAAGTCCGAGGCCCATGAACACAAATTGACAATAGAGTTAGAAAATATGGCCAAAATAGTAGCAAATGCTCTTGTTCCACAAAAGAATGCTGCCACTCTTAAGCTTCGGTCTGTATACAACACTCTTCGGTTAGCACTCAGCTCACGATTGGATATCTCAGGACCGGACTTGAAAGCAATAAAGAAGATAAAGCAGAACCACGTATGGGGTAATCAGCTATTGAGAGCTTTTATGGAAAAACCTTATGAATCGTACATGGGAATTACTGGTGCTCAACCATTTGAGGACTTAGATGAAATTGAAGACAAAGACGTGACACAACCCTTTATTAGCCTACGACAGCTAGAAAGTTTGCATCCAAAATTTGCCAAAAAGGAGACTAGCTCAACACAGAAGCAACAAGAAAATAAGAAAAAGGAATCTACAACAAAAATTGATGACAAGGAGACAACATTTTTGGCTGCAGCAAAAACTGGCATAGTTGAAATTGTGAATGAGCTTCAAACTAAATTACCAAGTGACCAAGACACTACCCAAGACAAGGAAAGCCTATTGCTTGTGGCAATGAAGAACATAAAAAACAAATCAATAGATAACATTGACAAAAAGGAGACAGCATATTTGACTGCAGCAAAAAATGGCATAGTTGAAATTGTGTCTGCACTTCAATCTACAATACCAAGTGTAGTCCATGAGACTAACTCAAACAATGAAAATGTTTTGCTTGCGGCAGTGAAGAACAGACAACCCCGTGTTGTTGAGTTGTTGCGGAAGAATTTGGACAAGGAACTGTTCTATAGCCTAATTTTTGAAGTGGATAATAAGGAGAACACTGTGTTGCATTTGGCAGCAGGTACAGCAAGCAACAATGAAAAGACTTGGCGAATTGCTGGTGCTGCCATGCAAATGATGTGGGATATCAAATGGTATCAGTACATAAAAGAACTGGTGCCAGAGCATTTCATCTTCAGAACCAACAGAGATGACAAAACTGCAGGGGAAATCTTCAAGGAGAAACACAAAGATCTAGTGAAAAATAGTTCAGAGTGGCTGAAGGAAACATCTGAATCTTGCTCAGTTGTGGCAGCACTGATCGCCGGCGTTTCCTTTGCAACATCAAGCACTGTCCCTGGCGGCACTGACAAAGGCAAACCAGAGTTAGAAGGGCAACCAGCATTTGACACATTTGCCATAGCTTCCTTAATTGGACTCTGTTTCTCAGTCACTGCGTTGGTAATGTTCCTTGCCATACTCACTTCTAGAAAACAAGCTGAAGACTTTCGCAGGAGTTTACCATTGAAGCTTCTCTTTGGCTTAAGTTCTCTCTTTGTGTCCATTGCTTCCATGCTTGTTTCTTTCTGTGCTGCCCATTTCTTTGTTCTCAAGGACCAATACAAGAATGTCCTGTTTCCAGTTTATGTTGCCACTTGCTTGCCTATTACTTTCTATGCGGTGGTGCAGTTTCCATTATATGCTGATCTTGTTAAAGCTATTTTCAAGAAGGTGCCACAAGCAAGTTATAAGAGTGACCATTTATAG 2331 0.4157 MITVQGNSKIEETTAIEGTEADAADLFSVFRGCVVEGRWDYVIAAYENNSIYHKIKINESRGTALHVAVNDGKFELVYHLVDAIIEHEGNEVRGEKSAFRSTNERGDTPLHLAAARGFIGMCKCIIGENGERKDLIKAMNKKGETPLFRAVLTCQTQCFVYLHHVSKHDLDVPLRNNDGDSILHRAIRREFYDLAIIIIHCYPGLVDTRNKDGVTPLRTLATRSSAFKSGSNLMWWKQIIYQCIIVEPLDAEKAMKSYLETTIDKSEAHEHKLTIELENMAKIVANALVPQKNAATLKLRSVYNTLRLALSSRLDISGPDLKAIKKIKQNHVWGNQLLRAFMEKPYESYMGITGAQPFEDLDEIEDKDVTQPFISLRQLESLHPKFAKKETSSTQKQQENKKKESTTKIDDKETTFLAAAKTGIVEIVNELQTKLPSDQDTTQDKESLLLVAMKNIKNKSIDNIDKKETAYLTAAKNGIVEIVSALQSTIPSVVHETNSNNENVLLAAVKNRQPRVVELLRKNLDKELFYSLIFEVDNKENTVLHLAAGTASNNEKTWRIAGAAMQMMWDIKWYQYIKELVPEHFIFRTNRDDKTAGEIFKEKHKDLVKNSSEWLKETSESCSVVAALIAGVSFATSSTVPGGTDKGKPELEGQPAFDTFAIASLIGLCFSVTALVMFLAILTSRKQAEDFRRSLPLKLLFGLSSLFVSIASMLVSFCAAHFFVLKDQYKNVLFPVYVATCLPITFYAVVQFPLYADLVKAIFKKVPQASYKSDHL. 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03075 776 Gene3D - 383 596 IPR036770 -
Seca6g03075 776 FunFam Uncharacterized protein 27 257 - -
Seca6g03075 776 Gene3D - 48 230 IPR036770 -
Seca6g03075 776 SMART ANK_2a 105 134 IPR002110 GO:0005515
Seca6g03075 776 SMART ANK_2a 60 89 IPR002110 GO:0005515
Seca6g03075 776 SMART ANK_2a 500 530 IPR002110 GO:0005515
Seca6g03075 776 SMART ANK_2a 411 441 IPR002110 GO:0005515
Seca6g03075 776 SMART ANK_2a 178 207 IPR002110 GO:0005515
Seca6g03075 776 SMART ANK_2a 142 172 IPR002110 GO:0005515
Seca6g03075 776 Pfam Ankyrin repeats (3 copies) 65 163 IPR002110 GO:0005515
Seca6g03075 776 SUPERFAMILY Ankyrin repeat 34 221 IPR036770 -
Seca6g03075 776 SUPERFAMILY Ankyrin repeat 411 548 IPR036770 -
Seca6g03075 776 Pfam Domain of unknown function 613 723 IPR026961 -
Seca6g03075 776 PANTHER CASKIN 58 764 - -
Seca6g03075 776 MobiDBLite consensus disorder prediction 385 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03075 Seca-Chr6 96853205 96861781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03075 414 769 Miscellaneous Gene Families AT3G12360 24.627 2.03e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03075 - - gmx:100813041 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03075 6 96853205 96861781 Seca6g03075 6 96853205 96861781 ECH