Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03070 ATGAGAAGGAGGCCTGGAATTGGAGGGTTGCAGACAGCTGCTGCTGCAAGGGATCAATATCGTTTGCTGGGTGAGAATGTAGCCAAGATCAGAACCGATATGATGAAGGAGCAGCTTGCTACGTTTCGCTCTCAGCTTGAAGAGTTTGCTCGCAAGCACAAGAATGACATCCGCAAGAACCCTGCATTCAGATCACAGTTTCATGAGATGTGTGCTAAAGTTGGAGTAGATCCCTTGGCCTCAAATAAAGGTTTTTGGGCAGAGCTGTTAGGAATTGGTGACTTCTATTATGAACTTGGAGTTCAAATAGTGGATATTTGCTTAGCCACTAGACCCCACAATGGAGGATTGATCAACCTACAGGAACTGTGTCATGTCCTTCGTCAGAGACGAAAAAGTGATCGTGGAGTTGTTTCTGAGGATGATTGCTTGCGTGCTATCAGTAAGCTGAAGGTTCTGGGTAGTGGTTTTGAAGTTATTTCTGTCGGAAAGAGAAAACTTGTCCGTTCGGTTCCAACTGAGTTGAACAAAGATCACAATGAAATTCTAGAACTTGCCCAGGCTCAAGGATTTGTTACCGGCGACGAAGTAGAGAGGCGGCTATCTTGGACCTCAGGTCGTGCCATTGATGCCCTTGACACATTACTTGATGAGGGACTTGCAATGATTGATGATGGGCATAGAGATGGTAAACGACGGTACTGGTTTCCGTGTGTATCTCCCATCTCATCTTCAATAGGAGTTGATTCCTAA 753 0.4542 MRRRPGIGGLQTAAAARDQYRLLGENVAKIRTDMMKEQLATFRSQLEEFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPHNGGLINLQELCHVLRQRRKSDRGVVSEDDCLRAISKLKVLGSGFEVISVGKRKLVRSVPTELNKDHNEILELAQAQGFVTGDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCVSPISSSIGVDS. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03070 250 Gene3D - 91 171 IPR036388 -
Seca6g03070 250 PANTHER EAP30 SUBUNIT OF ELL COMPLEX 1 240 IPR016689 GO:0000814|GO:0071985
Seca6g03070 250 SUPERFAMILY "Winged helix" DNA-binding domain 175 238 IPR036390 -
Seca6g03070 250 SUPERFAMILY "Winged helix" DNA-binding domain 24 174 IPR036390 -
Seca6g03070 250 PIRSF ESCRT2_Vps22 1 245 IPR016689 GO:0000814|GO:0071985
Seca6g03070 250 Gene3D - 24 85 - -
Seca6g03070 250 FunFam Vacuolar protein sorting-associated protein 172 250 - -
Seca6g03070 250 FunFam Vacuolar-sorting protein SNF8 91 171 - -
Seca6g03070 250 Pfam EAP30/Vps36 family 6 225 IPR040608 -
Seca6g03070 250 Gene3D - 172 248 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03070 Seca-Chr6 96816228 96822509 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03070 K12188 - rcu:8282922 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03070 6 96816228 96822509 Seca6g03070 6 96816228 96822509 ECH