Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03025 ATGGAGTCTCACGCTACTTCCTTCGTGTCCAAAGCGAGAACCGCGTTCCATTCAGCTGCTGCCAAAGCAGAGCGGGTTCTCATGGACTTCAAATCCGATCGAGATTCGGATAAGCAATCGCGTGACGATTTTGGGAGGCAGCATGGAGATGAATCTGCTCGGAATGAGAACGAGTCAAAGCTTCTCAGTGAACTGAAGCATATAAAGTGGAGACCTCCACATATAGGAATAAAGCAGGATTGGCAAGATAGAATTAATAACATTCGAAAAGGGAGAAAAGAAGTTGGAGATACAGATAAAATTGGAGATGCATCCTTGGCCTCTGTTCCATTTTATGATGAAAATTTGTACACTCGCAATGTGAAAAATGATCTTGATGCCAAGGCTTCAGAAGCAATTCCCTCAGTTGAAGGCATAACTGCTGCAACTAAAGAACCCATTCCTCCATCGTCTGTCTTGAAGCAATTGGCTATAGCTATTGAGGCTGGAAGGAAAACAAATTCAATGAAAGATTTTGTAGCTTCATCTGGAGGTTCTTCACCTGCCAGAGAGAGGGCAGGCTTAAGTCTCTCTGCAGTGAAGGCTTTAGTGTTACGTGAAAAGGAGGACAAACTTACCTCTGAGTTTAGTAGCGATGAGAAAGTTGTGTATTTGATTAATTCTCTGTTTGATCCAGAGGGAGAGTTCCTTAAAAGGAAGATCTACTCCGATCCAGAGGAAATTGCCACAACATCTTTGCCAAGAGATATCCATGGTGCTCCTCCTGAAAGCTTGGTTGTTAAGCTAGCTGAAGTAATGGGAAACTTCAAGACCCTTCGAAAAATGGCTCTTTTTTGGTGCAGCGTTGTTGCTGAACTGAGAAAATTTTGGTCTGAAGAAAAACATTTACCTGGGGTTCCCCCAGATGACATTCCAGATCTGAAGTCATGTCTTCTGTATCAACACTTTCAAGTAATTAATTGTTGCATCTCTCGGAAAAGGCGCCATATCATTGCTACCGAATCTCTAGATTCTATGATGATTGAAGCCAATTCAGATACATTAGAATCAGCAAACTGTACTGACAGAACTCCTGCAAGCCCTTTATTATATGCTAGATTAAGTACTGGAGAGCTTGTTCTCCGACTTGGTGCTCTTTGCCCATCTGGAGATCTGACATTATTGGAAACTGGCGAGCCTGCGTACTCTCCTGTTACCCAGGAGGGACCCTTGCTTTCAGAAGATCTGATCAAAGAGACAGAGGAGTTTGTGCTGCGGACAGGGAGTGTTGGTGCTGGGTGCTCTCAACTCCTCTCTGATATGCAGGCTTTCAAGGCTGCAAATCCTGGCTGTATTTTGGAAGATTTTGTGAGATGGTACTCTCCTCCTGATTGGACCGAAAGTGAGGCAAGTACTGAGGATAGTGGTTTTACTGATGGTGGTGAGTCATTGTCTTCCAGAGGTCAACTAAGTCGGCGAATGCAAAAAGAAGGTGTATTATGTTGCATGATGATGGTAGGTAATTTGTGGCGTGAATTGTGGGAAACATCTAAACCAGTACCGGCTGCAAAACAGGCACCTCTCTTTGATGAAGATTTGGCTGTGGAGGGCATCCTTGATGCATTTGAGGACATCCAGCCCTCTGAGCTTTTTGGACAGCTGTTTGTATCTCTACTTGGTTTAGGATTTGCAATTGCCGAACCTATGCTGTCCGGTAACATTGACTTCTCAAAGTTGTTCAATGACTGCAAGGAGTATGTAGTGACTACTTGTCAAAGCAACAGATTCAGTGAGAAAGTTGATGAACTTGTTCAGGTATATGAAACGGTGGAGACAATGTTGGTGAATCCTGAGGAGGCACTAAAGATAATGAAACACACAGAAGAATCAACTGGTGAACCAAAGCGGCGGTTCAAGAGGTTCAGCCATATGTTTGGTAGCAAAGATAAACTGTTGACAAGGCCTGTCCAGAAAGATCAGATCAACGATGGAGAAAAGCCGATTCGACAATCATTTTCAAGTTTCTTTGACAGCAAGTCATCTTTGTTTTCAAAGAAGTCTCCCAAACCTGGAAATCTATCCCCTCCTTCTCTGGATAGTGATTGGACAGTTGTTTAA 2097 0.434 MESHATSFVSKARTAFHSAAAKAERVLMDFKSDRDSDKQSRDDFGRQHGDESARNENESKLLSELKHIKWRPPHIGIKQDWQDRINNIRKGRKEVGDTDKIGDASLASVPFYDENLYTRNVKNDLDAKASEAIPSVEGITAATKEPIPPSSVLKQLAIAIEAGRKTNSMKDFVASSGGSSPARERAGLSLSAVKALVLREKEDKLTSEFSSDEKVVYLINSLFDPEGEFLKRKIYSDPEEIATTSLPRDIHGAPPESLVVKLAEVMGNFKTLRKMALFWCSVVAELRKFWSEEKHLPGVPPDDIPDLKSCLLYQHFQVINCCISRKRRHIIATESLDSMMIEANSDTLESANCTDRTPASPLLYARLSTGELVLRLGALCPSGDLTLLETGEPAYSPVTQEGPLLSEDLIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWYSPPDWTESEASTEDSGFTDGGESLSSRGQLSRRMQKEGVLCCMMMVGNLWRELWETSKPVPAAKQAPLFDEDLAVEGILDAFEDIQPSELFGQLFVSLLGLGFAIAEPMLSGNIDFSKLFNDCKEYVVTTCQSNRFSEKVDELVQVYETVETMLVNPEEALKIMKHTEESTGEPKRRFKRFSHMFGSKDKLLTRPVQKDQINDGEKPIRQSFSSFFDSKSSLFSKKSPKPGNLSPPSLDSDWTVV. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03025 698 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 19 684 IPR045700 GO:0005096|GO:0043547
Seca6g03025 698 MobiDBLite consensus disorder prediction 673 698 - -
Seca6g03025 698 MobiDBLite consensus disorder prediction 460 483 - -
Seca6g03025 698 MobiDBLite consensus disorder prediction 27 59 - -
Seca6g03025 698 Pfam Rab3 GTPase-activating protein catalytic subunit 374 536 IPR026147 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03025 Seca-Chr6 96350201 96359727 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03025 K18270 - gmx:100800515 1084.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03025 6 96350201 96359727 Seca6g03025 6 96350201 96359727 ECH
Seca6g03025 6 96350201 96359727 Seca6g03025 6 96350201 96359727 PCT