Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03003 ATGGAGATTGATACAAACCCAGTCGGTTCATGCTCCAAAGAGCACCTGAACCTTTATCAAGAGTGGTTCAAATATGCAGATGCAGATAGCGATGGTCGTTTTACAGGGAATGAAGCCACTAAGTTTTTCACCATGTCAAACTTGTCTCGACAAGAGCTTAAGCAGGTGTGGGCTATTGCAGATTCAAAGCGAGAAGGATATCTTGGTTTCAAAGAATTTGTCATTGCTATGCAGCTAATTTCTCTAGGACAATCTGGGCACCCAATAACACATGATCTGCTGACTAGTACTGATGGTAAGATTTATACATTTAGGTTTGTCTTCCAATGTGTATGGCTCACTAAATCTATATGTTTGTGTGAGTTAAAGATTTTACAATGCATACATTCTGTTACTTGTGAACGTCTATCTTATAAAGCTACTAATAAAAGCTTAACTTTGATTCCAGTTTATTTGACAGATATCAAACCACCCACAATGGAGGGTTTGGATGCATTAGTTGCAGTGTCTGCTTCCTCTGTAACATCAATTATTGATGGTTTGAAGAGACTCTACCTTCAGAAGTTGAAGCCTTTAGAAGTTACTTACCGCTTTAATGATTTTGTGTCCCCTTTACTGACAAATAGTGATTTTGATGCCAAACCTATGGTTTTGCTTTTGGGTCAATACTCAACTGGGAAAACAACATTTATTAAGCATATGCTTAAAAGAGCTCATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATGTCTGGACCTGATGAGAGAAGTATTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTGGTGGTCTTACAACTTTTGGCACATCTTTTTTGTCCAAATTTGAGTGTTCTCAAATGCCTCATCCTCTACTGGAACACATTACATTTGTGGACAGTCCTGGTGTTTTATCAGGAGAAAAGCAACGAACACAAAGAGCATATGATTTTACTGGTGTAACATCTTGGTTTGCTGCTAAGAGTGATTTAATACTCCTTTTGTTTGATCCTCACAAACTTGATGTAAGTGATGAGTTCAAACGTGTGATATCATCGCTAAAGGGTCATGATGATAAAATTCGAGTGGTCCTCAACAAGGCAGACCAAGTTGATACTCAACAACTAATGAGGATTTATGGTGCATTAATGTGGTCACTTGGGAAGGTGTTGAATACTCCTGAAGTCATGCGAGTGTATATTGGCTCTTTCAACGACAAGCCTTTAAATGATTCTGTAAGTGGTCCACTTGGTAATGAGCTTTTCGAAAAAGAACAAGAGGATCTTCTTTCAGATTTGAAAGATATACCAAAAAAGGCTTGCGATCGAAAAATCAATGAATTTGTAAAACGAGCTCGAGCTGCCAAGATACATGCTTATATTATCAGCCATCTTAAAAAGCAGATGCCAACCATGATGGGGAAATCTAAAGCTCAACAAAAGCTCATTGATAACTTGGAAGGTGAATTTGCAAAGGTACAAAGGGAGTTCCATTTACCTGCTGGTGATTTCCCAAATGTTGATCAGTTCAAAGAGACCTTGAGTGGGTACAACATTGACAAGTTTGAGAAATTGAAACCAAAAATGATACAAGCAGTGGATGACATGCTTGCTCATGACATTCCTAATCTCTTAAAGACTTTTAGAAATCCCTATGATTAA 1677 0.3822 MEIDTNPVGSCSKEHLNLYQEWFKYADADSDGRFTGNEATKFFTMSNLSRQELKQVWAIADSKREGYLGFKEFVIAMQLISLGQSGHPITHDLLTSTDGKIYTFRFVFQCVWLTKSICLCELKILQCIHSVTCERLSYKATNKSLTLIPVYLTDIKPPTMEGLDALVAVSASSVTSIIDGLKRLYLQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVLLLGQYSTGKTTFIKHMLKRAHIGPEPTTDRFVVVMSGPDERSIPGNTVAVQADMPFGGLTTFGTSFLSKFECSQMPHPLLEHITFVDSPGVLSGEKQRTQRAYDFTGVTSWFAAKSDLILLLFDPHKLDVSDEFKRVISSLKGHDDKIRVVLNKADQVDTQQLMRIYGALMWSLGKVLNTPEVMRVYIGSFNDKPLNDSVSGPLGNELFEKEQEDLLSDLKDIPKKACDRKINEFVKRARAAKIHAYIISHLKKQMPTMMGKSKAQQKLIDNLEGEFAKVQREFHLPAGDFPNVDQFKETLSGYNIDKFEKLKPKMIQAVDDMLAHDIPNLLKTFRNPYD. 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03003 558 FunFam EH domain-containing protein 1 217 441 - -
Seca6g03003 558 Gene3D - 181 549 - -
Seca6g03003 558 Pfam N-terminal EH-domain containing protein 180 212 IPR031692 -
Seca6g03003 558 Pfam Cytoskeletal-regulatory complex EF hand 17 80 IPR000261 GO:0005515
Seca6g03003 558 Gene3D - 217 441 IPR027417 -
Seca6g03003 558 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 211 443 IPR030381 GO:0005525
Seca6g03003 558 CDD EH 19 85 IPR000261 GO:0005515
Seca6g03003 558 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Seca6g03003 558 SUPERFAMILY EF-hand 12 95 IPR011992 -
Seca6g03003 558 Pfam Dynamin family 217 372 IPR045063 -
Seca6g03003 558 Coils Coil 481 501 - -
Seca6g03003 558 Pfam Domain of unknown function (DUF5600) 448 549 IPR040990 -
Seca6g03003 558 SMART eh_3 12 99 IPR000261 GO:0005515
Seca6g03003 558 ProSiteProfiles EH domain profile. 15 93 IPR000261 GO:0005515
Seca6g03003 558 CDD EHD 216 456 - -
Seca6g03003 558 PANTHER EH DOMAIN 14 554 - -
Seca6g03003 558 Gene3D - 11 101 - -
Seca6g03003 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 479 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03003 Seca-Chr6 96023949 96029945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03003 1 558 EF-hand Containing Proteins AT3G20290 69.849 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03003 K12483 - gmx:100816958 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03003 6 96023949 96029945 Seca6g03003 6 96023949 96029945 ECH