Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03002 ATGCTTCCTCAGCGCATGAAGAAAGCTATCACTGATAACCCAAAGAAGGTTGCCAACTTGATTGACCTTGTGAACCTTCCTTCCACCCTCAGAGACTTCGTGGGTCAATCTCAGATTTCTCGTTTGGGCTGTTTCATGCGTGTTTGGTCCTACATCAAAACCAATAATCTCCAGGATCCAAACAACAAGAATGTGGTCAACTGTGATGAAAAGTTGAAAAGTATTTTGTTGGGGAAACCTCAGGTTGAATTAGCAGAACTTCCTGCACTTATCAAGCTGCATTTTCCGAAAGAGCCCAAGTGA 303 0.4323 MLPQRMKKAITDNPKKVANLIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQVELAELPALIKLHFPKEPK. 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03002 100 CDD SWIB-MDM2_like 24 95 - -
Seca6g03002 100 Gene3D SWIB/MDM2 domain 16 100 IPR036885 -
Seca6g03002 100 Pfam SWIB/MDM2 domain 24 95 IPR003121 -
Seca6g03002 100 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
Seca6g03002 100 SMART swib_2 20 100 IPR019835 -
Seca6g03002 100 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 12 100 - -
Seca6g03002 100 SUPERFAMILY SWIB/MDM2 domain 16 97 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03002 Seca-Chr6 96016579 96017632 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Seca6g03002 SWIB 7.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03002 - - adu:107471538 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03002 6 96016579 96017632 Seca6g03002 6 96016579 96017632 ECH