Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03001 ATGTTCGTCTATAGGGTCTTGTCTCGTGCCTCCAGAACCGTGAGCCGAAGCTCAACGCTTCTCTCTGCTTCGCAGAATCCCCAACCCTTGTCTTCCACCCTCTCCCATCACTTCCATTCCCTCGTTCATCAATCACCCAACAAGCTTATTCCGCTTCAAATCAATTTGTTGAGTCCATCAATAAATTCATCCATGACTCCAAGATTTGGATTTTCTTCATCGGCTTCACCTGAACCTGCAAGTGATGAACAGGGGAAGACAAGTGAAGAAACTAAGGCAGCAGATCAAACCAAAGAATCAGATATAGAGAGTGAGAGTGATCTATCCAGGGATGATTTAATAAAGCTTGTTGCTAAGAAGGAAGGACTTTTGAAGTTGAAGCACAAAGAGATTGAGAAAATGCAGGATAAAGTTTTACGTACTTATGCAGAGATGGAGAATGTCATGGACAGGACAAGACGTGAAGCAGAGAATTCGAAGAAATTTGCTATACAGAATTTTGCGAAGAGTTTACTAGATGTTGCTGACAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGACAGTTTTTCAAAAATTGAATCACCTAATGACTCTGATGAAGCAGCAAAACTCCTGAAGACACTTCTGGAAGGTGTTGAAATGACTGAGAAACAACTTGCAGAGGTACTTAAAAAGTATGGTGTAGAAAAATTTGATCCTACAAATGAACCATTTGATCCACACAGGCATAACGCCATCTTCCAAATACCTGATGCTTCCAAGCCCCCAGGCACTGTTGGAGTTGTTCTGAAGGCAGGATATATGCTTTATGATCGCGTTATTCGGCCAGCAGAAGTTGGTGTAACACAAGAAGTGGAGCAAAACGATGCAGCTGAGTGA 879 0.4221 MFVYRVLSRASRTVSRSSTLLSASQNPQPLSSTLSHHFHSLVHQSPNKLIPLQINLLSPSINSSMTPRFGFSSSASPEPASDEQGKTSEETKAADQTKESDIESESDLSRDDLIKLVAKKEGLLKLKHKEIEKMQDKVLRTYAEMENVMDRTRREAENSKKFAIQNFAKSLLDVADNLGRASSVVKDSFSKIESPNDSDEAAKLLKTLLEGVEMTEKQLAEVLKKYGVEKFDPTNEPFDPHRHNAIFQIPDASKPPGTVGVVLKAGYMLYDRVIRPAEVGVTQEVEQNDAAE. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03001 292 ProSitePatterns grpE protein signature. 238 281 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca6g03001 292 Gene3D - 110 226 IPR013805 -
Seca6g03001 292 PANTHER GRPE PROTEIN 9 285 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca6g03001 292 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 228 283 IPR009012 GO:0006457
Seca6g03001 292 PRINTS GrpE protein signature 139 155 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca6g03001 292 PRINTS GrpE protein signature 235 250 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca6g03001 292 PRINTS GrpE protein signature 262 281 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca6g03001 292 MobiDBLite consensus disorder prediction 68 106 - -
Seca6g03001 292 FunFam GrpE protein homolog 111 226 - -
Seca6g03001 292 Pfam GrpE 96 282 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca6g03001 292 Hamap Protein GrpE [grpE]. 81 283 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca6g03001 292 FunFam GrpE protein homolog 227 283 - -
Seca6g03001 292 Gene3D Head domain of nucleotide exchange factor GrpE 227 282 IPR009012 GO:0006457
Seca6g03001 292 CDD GrpE 132 281 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca6g03001 292 MobiDBLite consensus disorder prediction 83 106 - -
Seca6g03001 292 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 121 227 IPR013805 -
Seca6g03001 292 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03001 Seca-Chr6 96009975 96013462 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03001 K03687 - gmx:100812682 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03001 6 96009975 96013462 Seca6g03001 6 96009975 96013462 ECH