Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02998 ATGGTGAATGTAGGTCGGTTATATGCGATGGAAAGGGGGATGAAGATTCCACAGAGCGAACGCACCAAGACCACTAATGCTCTGCTTCTTTCCCTCATGAACCAGCTTGAAAAGGATAGAAAGGCAACCAAGTTAGGGCCTGAAGATAATTTATATATTGAGGGATTTGCCTTAAATGTGTTTGGAAAGGCAGACAAACAAGATCATGCTGGGAGAGCAGATTTGAATACAGCAAAAACATTTTATGCTGCTAGCATCTTTTTTGAGATTCTTAATCAATTTGGGACACTTCAACCTGATCTGGAGCAAAAACAGAAATATGCAGCCTGGAAAGCAGCAGATATAAGAAAGGCTTTGAAAGAAGGAAGGAAGCCCACACCTGGCCCACCTGCTGGTGATGAGGATATGTCAATTCCATCAAATACTCCTAGTAATACATATGACCTTGGCACTACTGGAACTACGGTTACCAGTCCTGGACCAGAATCTGATCCATCACATAATTTTCATGATCCTGTCAACTACCAGCATTTGCAAAGCATTCATCCTGCTTCTGAATTCCATGATACTATTAACAATCATGATTCTACAAATATTCCACCATCTATGCAGTTTCATGATAGAGTTGGTAATAATGAAAATTCTTCTAATATTTCTCCACCATCTTCTCCTTATCCATCTACAGGTTACCCTTCCCAAGATTATCATCACCCTCCACCATCCCAAGATTACCATCCTCCTCCATCTTCTCAAGATTACCATTCATCTCCACCTGCCAGATCAGAAGGTCCTTCATCTCTAGGCTACAACCATCAGCAGTACTCACAGGAGCATTCGCAAAATTTAGATCCTAATTACTCTCATGAAACTCCCTCTTACTCTTATACACATTTTCAGTCTTATCCAGGTTTTTCAGAAAGCAGCCTACCATCAATTTCATTGAACTATTCGTATTATCAAGGGTCTGATGCTTCTACATATTCTTCCCAGTCAGCTCCTCCAACCACAAACCATTCATCAAGTACCCAGCAAAGTTCACTTGGCAGAAATGGAACTGTCTCAGAACCTAATTCAACTACTCAGACATACCAATATGACAGTAACTACCAGCCACCACCTGAAAAAATAGCAGAGGCGCACAAGGCTGCAAGATTTGCTGTTGGGGCACTTGCATTCGATGATGTGTCGACTGCAGTTGACTACTTGAGGAAATCACTTGAGTTGCTGACAAATTCATCATCTGGCCAACAAGATTGA 1257 0.4145 MVNVGRLYAMERGMKIPQSERTKTTNALLLSLMNQLEKDRKATKLGPEDNLYIEGFALNVFGKADKQDHAGRADLNTAKTFYAASIFFEILNQFGTLQPDLEQKQKYAAWKAADIRKALKEGRKPTPGPPAGDEDMSIPSNTPSNTYDLGTTGTTVTSPGPESDPSHNFHDPVNYQHLQSIHPASEFHDTINNHDSTNIPPSMQFHDRVGNNENSSNISPPSSPYPSTGYPSQDYHHPPPSQDYHPPPSSQDYHSSPPARSEGPSSLGYNHQQYSQEHSQNLDPNYSHETPSYSYTHFQSYPGFSESSLPSISLNYSYYQGSDASTYSSQSAPPTTNHSSSTQQSSLGRNGTVSEPNSTTQTYQYDSNYQPPPEKIAEAHKAARFAVGALAFDDVSTAVDYLRKSLELLTNSSSGQQD. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02998 418 Gene3D - 5 125 IPR023175 -
Seca6g02998 418 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 246 411 IPR044538 GO:0032511
Seca6g02998 418 MobiDBLite consensus disorder prediction 323 369 - -
Seca6g02998 418 MobiDBLite consensus disorder prediction 188 293 - -
Seca6g02998 418 MobiDBLite consensus disorder prediction 119 173 - -
Seca6g02998 418 MobiDBLite consensus disorder prediction 188 223 - -
Seca6g02998 418 Pfam Vta1 C-terminal domain 373 410 IPR041212 -
Seca6g02998 418 Pfam Vta1 like 6 121 IPR039431 -
Seca6g02998 418 Gene3D Immunoglobulin FC, subunit C 373 411 - -
Seca6g02998 418 MobiDBLite consensus disorder prediction 137 173 - -
Seca6g02998 418 MobiDBLite consensus disorder prediction 247 293 - -
Seca6g02998 418 MobiDBLite consensus disorder prediction 323 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02998 Seca-Chr6 95970095 95974320 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02998 K12199 - gmx:100783739 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02998 6 95970095 95974320 Seca6g02998 6 95970095 95974320 ECH