Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02996 ATGCTTGTACTTTGTACTATATACTTTTTCTATAGCTGCACACAAATGCACATATGCTATTCAATCAATAATATCCCTCTCTCAGTTGAATTGTTCTATGTTGGGAAGGTCAAAGGCATGCAAGTGGGTCTTACAGTAAATTTAAGGAACCAAGAAGGAACTCTTAAGTTAACTCTATTAGATTATGGATGCTATGTGGGAGATTTATCCATAAAGTTGGACGGTGGAGCATCTTGGCTTTACCAATTGCTAGTAGATGCTTTTGAAGTGAATATAGCATCTGCAGTTGAAGAGGCCATTTCGGACAAAATAAGAGAAGGGATAGGGAAGCTTGACAATTTATTACAATCTCTTTCAAAGCAAATCTCACTAGACAAAACTGCTGCACTAAATGTATCTTTTGTTGGCAATCCTGTGTTGAGTAATTCCTCTATTGCAATTGCAATAAATGGTTTATTCATAGGGAGAAATGAAGCTTTAGTACCTCAAGTTTTCCAGAAAGGATTAAAAATTTCTGCTGCCTGTGGTGGTTTACCAAAGATGATAAAGGTTTCAATACATGAAAATGTGTTCAAATCTGCTTCCCTAGTTTACTTCAATGCAGGTAAAATGCAATTGATTATTGATGAACTACCCAATCAGGCCATTTTGAACACTGCTGAATGGAGATTCATAGTTCCCCAATTATACAAGCAATATCCAAATGATGACATGCAGCTTAATATCTCTGTATCTTCTCCACCACTTATACAAGTGACCTACCAAGATATTGGTGCTACTATTTTTGTAGATATAACAATTGATGTTCTGGAAGGTGGCCAAGTCATACCTGTTGCATGCATCTCAGTGGATATTAGTGCTTCATGTGCTGTGGAAATTGTGAAAAACAAAATTGCTGGTAGGCTTAGATTACAAAAATTTTCTACATACTTGAAATGGAGCAAAATAGGGAAACTGCACATGAATCTGGTTCAGGTAAATCAGAATAGAAGTCTTCATATTTTCAACTTGCAGCTATGTATGTGTTTATTGATAAAAATTGAATGA 1047 0.3563 MLVLCTIYFFYSCTQMHICYSINNIPLSVELFYVGKVKGMQVGLTVNLRNQEGTLKLTLLDYGCYVGDLSIKLDGGASWLYQLLVDAFEVNIASAVEEAISDKIREGIGKLDNLLQSLSKQISLDKTAALNVSFVGNPVLSNSSIAIAINGLFIGRNEALVPQVFQKGLKISAACGGLPKMIKVSIHENVFKSASLVYFNAGKMQLIIDELPNQAILNTAEWRFIVPQLYKQYPNDDMQLNISVSSPPLIQVTYQDIGATIFVDITIDVLEGGQVIPVACISVDISASCAVEIVKNKIAGRLRLQKFSTYLKWSKIGKLHMNLVQVNQNRSLHIFNLQLCMCLLIKIE. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02996 348 SMART bpi2_2 176 345 IPR001124 GO:0008289
Seca6g02996 348 Gene3D - 12 111 - -
Seca6g02996 348 Pfam LBP / BPI / CETP family, N-terminal domain 31 110 IPR017942 GO:0008289
Seca6g02996 348 PANTHER OS06G0309200 PROTEIN 36 327 IPR045897 -
Seca6g02996 348 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 36 142 IPR017943 GO:0008289
Seca6g02996 348 Pfam LBP / BPI / CETP family, C-terminal domain 179 329 IPR001124 GO:0008289
Seca6g02996 348 Gene3D - 112 335 - -
Seca6g02996 348 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 144 334 IPR017943 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02996 Seca-Chr6 95936808 95940241 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02996 K05399 - gmx:100815362 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02996 6 95936808 95940241 Seca6g02996 6 95936808 95940241 ECH
Seca6g02996 6 95936808 95940241 Seca6g02996 6 95936808 95940241 PCT