Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02992 ATGAGTTTGGTGCCAAAAGAAACAATTGAAGTCATCGCACAGAGCATTGGCATCACCAATTTATCCTCCGATGTTGCCCTCGCTCTCGCTCCCGATCTCGAGTATCGTATGCGCGAAATCATGCAGGAGTCAATAAAGTGCATGCGCCATTCAAAGAGAACTTTTCTTGCTGCAGATGATGTGGATAGTGCGCTTGCATTGAGAAATCTAGAGCCAATATATGGTTTCACGTCTAATGATCCTCTGCGGTTCAAAAGAGCTGGTGGACACAAGGATTTGTTCTACATTGATGACAAAGATGTCGATATTAAAGATCTGGTTGAAGCACCTTTACCAAAAGTACCCCTTGATACAGCAATTACCAGTCACTGGTTGGCTATTGAAGGTGTGCAACCTGCAATTCCTGAAAATGCTCCAGTGGAAGCTCCCTCCGAGATAAGAAAATCTGAATATAAGGAAGACGGGCTTCCTGTTGATGCTAAACTACCTGTTAAACATGTAATAACAAGGGAACTTCAGCTTTACTATGAAAAAATAACTGAGCTGAGTTTAAATAAGCCTGGCTCTATTCCTTTTAGAAGAGCACTGATTAGCTTGGCGGCTGACTCAGGACTCCATCCCTTAGTTCCATATTTCACATGCTTTGTTGCTGATGAGGTGGCACAAAATTTAAATAATTTAGATATTCTATTTGCATTGATGCGCCTTGTGTGGAGCCTTTTGCGAAATCCTCACATACACATAGAACTTTATTTACATCAATTGATGCCGCCTATCATTACTTGCACTGTTGCAAAAAGGATAGGAAACAGACCATCCGATAATCACTGGGAGCTTAGGAACTTCAGTGCTAATCTTGTTGCTTCAATATGCAAAAGATTCGGGCATATTTATCATAATCTTCAGCCACGTGTGACAAAGACATTTCTTCATTCTTTCTTGGACCCTACAAAAGCTCTACCTCAACACTATGGTGCAATTAAAGGGATAGCAGCTCTTGGATCAAGATTGGTTCGCTTGCTTATACTCCCAAATCTCGAGCCATATTTGCATCTTCTTGAGTCAGAAATGCAACTTGAGAAGCAAAAAAATGAAATAAAAAGGCAAGAAGCATGGCAAGTTTACGGGGCCTTGCTGTGTGCAGTAGGCCAATGCTTGCATGAAAAGGGCAAAATATTGAGCAGTTTGCTCTCTCCTCCAACTCGTGCTACTTCAAGAGGCAACGGAAAAGCCATGATTGCAATTCCAGAGGGCCCTGGGGGTGTGGTGCCAATGAACTCCATGTCAGTTGACAACATGCAAGGGTCAACAGGTGGATTTTCCACCATGATGGGGGTTTCTAATGTTGGCATGTCATCAATGGGTCGTCAATTAACTAATGACAACACACCAGCATCTGCCATTCTTGCTCAAGCTTGGAAGGATGACATGGATGCAGGACAATTGCTGTCATCAGTGTTTGAATTGTTTGGTGAAAACTTTTATGCTATAAATACTGATGCTCAAGCACTGTTGCATTCTGCTGCTGAGAACCCTATCAAAATTGGAGAACTTCTAACTCGTGGGTTAGGTACTGGTGGGAATCCACTCTTGGGGGAACAAGCTGCTGAAGAATCAAAAGAAGCTATTGCTGATGCTCTCAAAGGCTCAGATTTAGTGTTTGTAACTGCTGGCATGGGTGGAGGCACAGGGTCTGGTGCTGCTCCAGTTGTGGCCCGAATATCAAAGGAGGCAGGTTACTTGACTGTAGGTGTTGTTACCTATCCCTTCAGTTTTGAAGGACGCAAAAGATCCTTGCAGGCACTGGAAGCCATTGAAAAGCTGCAGAAAAATGTGGATACACTTATAGTGATTCCAAATGATCGTCTGCTTGACATAGCTGATGAGCAGACTGCACTTCAGGATGCTTTCCGTCTTGCAGATGATGTTCTACGACAAGGGGTACAGGGAATATCAGACATCATAACAATTCCTGGGCTTGTAAATGTAGATTTTGCTGATGTAAAAGCTGTGATGAAAGACTCTGGAACTGCAATGCTTGGAGTAGGTGTTTCCTCCAGTAAAAACCGTGCAGAAGAAGCTGCAGAGCAGGCTACTTTGGCTCCTTTAATTGGATCATCTATTCAGTCAGCTACCGGTGTAGTCTACAATATTACTGGAGGAAGAGACATAACTCTGCAGGAAGTGAATAGAGTGTCTCAGGTCGTGACAAGTTTAGCTGATCCTTCTGCCAATATTATATTTGGGGCTGTTGTTGATGATCGCTACAATGGGGAGATTCATGTGACTATCATTGCAACTGGCTTCTCACAGTCCTTCCAAAAGACACTACTAACAGATCCAAGGGCTGCAAAGCTGCTTGATAGATTACCCGGAGGCCAAGAAAACAAGGCAACAACCACTCCCCCCAATGCCTCAAACTTTCTATCAACAGTTGCATCTAGAGCAACCCCACGAAAGCTCTTCTTTTAG 2472 0.4337 MSLVPKETIEVIAQSIGITNLSSDVALALAPDLEYRMREIMQESIKCMRHSKRTFLAADDVDSALALRNLEPIYGFTSNDPLRFKRAGGHKDLFYIDDKDVDIKDLVEAPLPKVPLDTAITSHWLAIEGVQPAIPENAPVEAPSEIRKSEYKEDGLPVDAKLPVKHVITRELQLYYEKITELSLNKPGSIPFRRALISLAADSGLHPLVPYFTCFVADEVAQNLNNLDILFALMRLVWSLLRNPHIHIELYLHQLMPPIITCTVAKRIGNRPSDNHWELRNFSANLVASICKRFGHIYHNLQPRVTKTFLHSFLDPTKALPQHYGAIKGIAALGSRLVRLLILPNLEPYLHLLESEMQLEKQKNEIKRQEAWQVYGALLCAVGQCLHEKGKILSSLLSPPTRATSRGNGKAMIAIPEGPGGVVPMNSMSVDNMQGSTGGFSTMMGVSNVGMSSMGRQLTNDNTPASAILAQAWKDDMDAGQLLSSVFELFGENFYAINTDAQALLHSAAENPIKIGELLTRGLGTGGNPLLGEQAAEESKEAIADALKGSDLVFVTAGMGGGTGSGAAPVVARISKEAGYLTVGVVTYPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTALQDAFRLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGRDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQKTLLTDPRAAKLLDRLPGGQENKATTTPPNASNFLSTVASRATPRKLFF. 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02992 823 SMART TAF_cls 2 68 IPR004823 -
Seca6g02992 823 SUPERFAMILY ARM repeat 196 388 IPR016024 -
Seca6g02992 823 Hamap Cell division protein FtsZ [ftsZ]. 436 793 IPR000158 GO:0003924|GO:0005525
Seca6g02992 823 SMART Tubulin_4 413 659 IPR003008 GO:0005525
Seca6g02992 823 SUPERFAMILY Tubulin C-terminal domain-like 661 776 IPR008280 -
Seca6g02992 823 ProSitePatterns FtsZ protein signature 1. 498 532 IPR020805 GO:0005525
Seca6g02992 823 SMART Tubulin_C_4 661 778 IPR018316 -
Seca6g02992 823 Gene3D - 164 369 IPR046344 GO:0006367
Seca6g02992 823 SUPERFAMILY Tubulin nucleotide-binding domain-like 488 659 IPR036525 -
Seca6g02992 823 FunFam transcription initiation factor TFIID subunit 6 1 66 - -
Seca6g02992 823 Pfam Tubulin/FtsZ family, GTPase domain 478 627 IPR003008 GO:0005525
Seca6g02992 823 NCBIfam cell division protein FtsZ 493 776 IPR000158 GO:0003924|GO:0005525
Seca6g02992 823 Gene3D Tubulin/FtsZ, GTPase domain 466 631 IPR036525 -
Seca6g02992 823 Gene3D - 632 770 IPR037103 -
Seca6g02992 823 Gene3D Histone, subunit A 1 66 IPR009072 GO:0046982
Seca6g02992 823 Pfam TAF6 C-terminal HEAT repeat domain 259 346 IPR011442 GO:0006367
Seca6g02992 823 Pfam FtsZ family, C-terminal domain 676 769 IPR024757 -
Seca6g02992 823 FunFam transcription initiation factor TFIID subunit 6 164 369 - -
Seca6g02992 823 SUPERFAMILY Histone-fold 1 65 IPR009072 GO:0046982
Seca6g02992 823 Coils Coil 350 370 - -
Seca6g02992 823 CDD FtsZ_type1 494 768 IPR000158 GO:0003924|GO:0005525
Seca6g02992 823 CDD TAF6C 165 381 IPR011442 GO:0006367
Seca6g02992 823 Pfam TATA box binding protein associated factor (TAF) 1 65 IPR004823 -
Seca6g02992 823 PRINTS Cell division protein FtsZ signature 666 687 IPR003008 GO:0005525
Seca6g02992 823 PRINTS Cell division protein FtsZ signature 580 601 IPR003008 GO:0005525
Seca6g02992 823 PRINTS Cell division protein FtsZ signature 552 572 IPR003008 GO:0005525
Seca6g02992 823 PRINTS Cell division protein FtsZ signature 643 665 IPR003008 GO:0005525
Seca6g02992 823 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 2 500 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Seca6g02992 823 FunFam Cell division protein FtsZ 1, chloroplastic 632 769 - -
Seca6g02992 823 ProSitePatterns FtsZ protein signature 2. 551 572 IPR020805 GO:0005525
Seca6g02992 823 FunFam Cell division protein FtsZ 484 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02992 Seca-Chr6 95894868 95905081 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02992 K03131 - gmx:100799998 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02992 6 95894868 95905081 Seca6g02992 6 95894868 95905081 ECH