Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02986 ATGGTTACAGAGGAAGAAATATCGGAAGCGGTGCAGTCGCTGTTGAGAGAATCTAACCCTAGAAGTCGAAGCTTCACCACGCTCAACCAAGTGGTTCAGGAACTTCAGGCCAAGCTCGGCCATGACCTCACCCACAAGCTCGATTTCATCACTGCACAGATCAACCTCCTCTATGCTTCCCAGCAACCACACCCTCCTCCTCCGCCGCCGCAACTTCCGCAGAGGCACTTACTGCACCCTCAACAACCCCAACAACCACCGCAACAACCACACCCACCACCTCCTTCTAAGGACCATTTTACCCTTCACCAAAACCCTAATTTCCACCCTGCCCCTGTCACTTCCGCCTTTCAGACCTTCCCTTCCAACCACGCTCCGCCGCTTAAACCCGACCCTGCTGCTGCTGCAGATGCTGCCCGCACTGAAGCTCCTCCTGTTTCAAGCAACGAGGCCCCCAAGGACAGTACTCAAACTAAGGCGAAGAGAAGAGGTGGCCCAGGAGGTCTCAACAAACTTTGTGGTGTTTCACCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGCCAAGAACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGAAAGAACAATCTCCAAGATCCTAGCAACAAAAGGAAAATCATTTGCAATGATGAACTGCGTGTGGTGTTTGAGACAGATTGTACTGATATGTTCAAGATGAATAAGCTACTAGCTAAACACATAATCCCCCTTGAACCAACCAAACAGCCTGTTCCAAAGAAGCAGAAGGTAGACGTGGAGTTGGAAACAAAAAGTGCTGAACCTGCTCCTTCTGTAATAATATCTGATGCACTTGCTAACTTTTTTGGCATCACTGGAAGAGAGATGCTGCAGTCAGAGGTTCTGAGACGTATCTGGGAGTACATAAAGGTCAACCAGCTAGAGGATCCTGTAAATCCTATGGCAATAGTGTGTGATGCAAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCAGCATTGGGGATACCTGAAGTTTTAGGCCGTCATCATATTTTTAGGAGATCATGA 1056 0.4848 MVTEEEISEAVQSLLRESNPRSRSFTTLNQVVQELQAKLGHDLTHKLDFITAQINLLYASQQPHPPPPPPQLPQRHLLHPQQPQQPPQQPHPPPPSKDHFTLHQNPNFHPAPVTSAFQTFPSNHAPPLKPDPAAAADAARTEAPPVSSNEAPKDSTQTKAKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKHIIPLEPTKQPVPKKQKVDVELETKSAEPAPSVIISDALANFFGITGREMLQSEVLRRIWEYIKVNQLEDPVNPMAIVCDAKLQEIFGCESISALGIPEVLGRHHIFRRS. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02986 351 ProSiteProfiles SWIB/MDM2 domain profile. 168 245 IPR003121 -
Seca6g02986 351 SUPERFAMILY SWIB/MDM2 domain 162 249 IPR036885 -
Seca6g02986 351 SMART swib_2 273 351 IPR019835 -
Seca6g02986 351 SMART swib_2 169 248 IPR019835 -
Seca6g02986 351 Gene3D SWIB/MDM2 domain 265 350 IPR036885 -
Seca6g02986 351 Gene3D SWIB/MDM2 domain 164 252 IPR036885 -
Seca6g02986 351 CDD SWIB-MDM2_like 274 345 - -
Seca6g02986 351 CDD SWIB-MDM2_like 173 243 - -
Seca6g02986 351 Pfam DEK C terminal domain 2 56 IPR014876 -
Seca6g02986 351 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 59 IPR014876 -
Seca6g02986 351 MobiDBLite consensus disorder prediction 61 76 - -
Seca6g02986 351 MobiDBLite consensus disorder prediction 83 99 - -
Seca6g02986 351 SUPERFAMILY SWIB/MDM2 domain 265 346 IPR036885 -
Seca6g02986 351 Gene3D - 1 59 - -
Seca6g02986 351 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 269 345 - -
Seca6g02986 351 MobiDBLite consensus disorder prediction 100 122 - -
Seca6g02986 351 MobiDBLite consensus disorder prediction 59 173 - -
Seca6g02986 351 Pfam SWIB/MDM2 domain 275 345 IPR003121 -
Seca6g02986 351 Pfam SWIB/MDM2 domain 173 243 IPR003121 -
Seca6g02986 351 ProSiteProfiles SWIB/MDM2 domain profile. 269 348 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02986 Seca-Chr6 95845968 95852210 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Seca6g02986 SWIB 1.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02986 - - gmx:100801960 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02986 6 95845968 95852210 Seca6g02986 6 95845968 95852210 ECH