Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02970 ATGGCATCAAACCAGAACCTGAAAGAACTACAATGGGTTCTGCAAGCAATCAATTCAGAGGGCCTAAATCTACACAGCATTTCCTTTTACCTTTCCCAACCAACTTCAGGTTGTTACCAAGAAACAGACAACTCCATAAACATCAACATTTCCAAGGACAATCTTCCATACTTCTCCCACCTCTTGACAACATTAGCAGCAGCCAAGACCACCAGATCCACCTTGAAAAACTTGGAGTTCCACCGAGTTGAATGGGAATCACAACAGGTAACAAATCTTGGTATCTTGCTGGGGAATAACCAAAGTGTACAGCAAGTTGTTTTTAGAAGAAACAGATTCAATGGGAAAAGCCTATCAGAACTTTCTGACATTCTGAAGGCAAATAAAGGGATCAAAGAGATTATGCTTTCAGAATCAAGTATTGGGTCTGTTGGAGCTGGACTCATTGCTTCTGCTCTTATGGTGAATGACAGTTTGGAGGAACTGCAGATATGGGAAGATTCAATAGGATCAAGAGGTGCTGAGGAGCTTTCAAAGATGATTGAAGTTAACCCAACTCTTAAATTGTTGACAATTTTTGACTCAAATGCCATCACAGCTACACCTCTTATATCTGCAGTTTTGGCAAGGAACAGAACTATGGAAGTTCATGTTTGGAGTGGAGAAAATGGGGAAAAGAGTTCCAAGGTGGTTGAGTTTGTGCCTGAGAACAGCACACTTAGAATTTACAAGCTTAACCTCTCAGGTGCTTGCAGGGTTGCTTGCTCCTTAGGAATGAACTTCACAGTCAAGTCACTTGACATGACTGGAGTCAAGCTAAAGTCCCGGTGTGCTAAGGAGTTTAGATGGGTTTTAGAACAAAACCAGACCCTCAAAGAGGTTAACTTGTCCAGAACATGCCTTAAAGATAAGGGCATTGTGTATGTTGCAGCTGGACTCTTTAAGAATCATAGTTTGCAAACCTTACATCTAACTGGAAATTGGTTCAGTGGAATAGGTGTGGAGCATCTCCTCTGCCCTCTGAGTAGATTTTCAGCTCTGCAAATGCAGGCCAACATTACTTTGAAGTGTGTTACTTTTGGAGGAGGGAGAACAAGAATAGGAAGGGATGGCCTAGCTGCTATTATACAATTTCTAGTTACCAATGAGACAGTGAGGAAGTTGGGGATACATGATGATGAGAGTTTGAGATCAGATGACTTTATTAAAATCTTCAAGAGCTTAGAGAAGAATGCTAGCTTGAAATGTTTATCTTTGCAAGGCTGCAAAGGGGTTCAAGGAGAGACATTGCTGCAGACAATTATGGAGACACTACAGATAAATCCTTGGGTTGAAGATATTGATCTTTCCAGAACACCTTTACACAATTCTGGAAAGACTACAGGAATTCATCAAAGATTGGGGCAGAATGAGAACACTGAAGCAGAGATGGATTTGCTCAAGGAAATGCCACTGACAGAGCCCAAGAGTTGCAGAGTTTTCTTTTGTGGCCAAGAATGTGCAGGCAAAACCACACTTTGTCATTCAATATCACAAAACTTCTCTGCTTCGGCACTTCCCTACTTGGATCAAGTCAGAACAATAATGAACCCAGTGGAGCAGGCTGTGAAAACAGTTGGAATGAAGATAAAAACTTTCAAGGATGAGGATACAAAGATTTCAATATGGAATCTTGCTGGTCAACATGAGTTTTTCTCCCTCCATGATCTTATGTTCCCAGGGCATGGGAGTGCATCATTTTTCATTATCATATCAAGTTTATTCAGGAAGCCAAGTAACAAAGAACCAAAAAGCACGGCAGAGATTGAAGAGGACCTGCAATATTGGCTCAGGTTCATAGTTTCCAATTCCAAAAAAGCAGTACAACAATGCATGCTACCAAGTGTTGCTGTTGTTCTCACACACTTCGATAAAATCAACCAAGCATCACAAAATTTTCAGCACACAGTTGATTCAATTCAGAGATTGAGAGACAAGTTCCAAGGCTTTGTTGATTTCTACCCAACTGTATTCACAGTTGATGCAAGATCATCAGCATCAGTTAGTAAACTCACTCATCACATCCGAAAGACATGCAAGACAATGCTCCAGAGAGTACCGCGAGTTTATCAACTTTGCAATGATCTGATACAGATTTTATCAGAGTGGAGATCTGAGAATTACAACAAGCCAGCAATGAAGTGGAAGGAGTTTGGTGAGCTATGCCAAGTAAAAGTCCCATCCTTGAGAATTCGATCAAGACATTATAATAAAGAGGTGGTGGAAATGAAGAGGAAAGCTATTGCTACTTGTCTTCATAACATTGGTGAGGTGATTTATTTTGATGAGTTGGGGTTTCTAATTTTAGATTGTGAGTGGTTCTGTGGTGAAGCACTTGGTCAGCTCATTAAATTGAATGTTAGGAAGCAACACTCCTCTGAAAACAATGGATTTATTAGCAGGAAGGAACTAGAGAAAATCTTAAAAGGAAGCTTACAGAGCCCAATTCCTGGCATGGGTTCAAAGGTATTTGAGAACTTAGATGCTAGTGACCTTGTGAGGATGATGCTAAAACTTGAACTTTGTTATGAGCAAGATCCATCAGATCCAAATTCTCTGCTATTGATTCCCTCCATTCTTGAAGAAGGAAGAGGAAAGCCTCAGAGGTGGCAGCTAAGCACACCAGATTGCCTCTATGCAGGACGCCATCTTGAGTGTGATGATTCAAGTCACATGTTTCTAACTCCAGGATTCTTCCCTCGTTTACAGGCAAGAATTTCTCTTGCCACATTCCTCTTTTTCCCTTCAGTTTCACCCTTTTCAATTGTGCACCTTCACAACAGAATAAAGGCTCTAAGTAACCAACAAAGTGCAACTTACAGTCTTGAGAAGTACCTCATTTCAATCAGCATTAATGGAATCTACATCAGAGTAGAGCTTGGAGGACAATTGGGTTACTATATAGATGTCCTTGCATGCTCCACCAAAAACTTGACAGAAACTTTAAGAGTCATTCAACAACTTATAATCCCAGCAATCCAAAACGTTTGCCATGGGATCACCCTGACTGAAAATGTCATTAGACCAGAATGTGTGCGAAATTTGACACCCCCAAGATACAGAAGAACTCAATTTGCTTCCTTACAGCAACTGAAACAAGCACTGCTTTCACTTCCAGCAGACAGCATGTATGATTATCAGCACACATGGAGTTCAGTCCTGGACTCTGGTAGGTCTGTTCTCCAAGAAGGGTTCGATTTGGCGCGAGACCTTTTATCAGATGATGACTTCCGGGAAGTGCTGCATAGAAGGTATCATGACCTATACAATCTTGCCCAAGAACTGCAAGTCCCACCTGAAAATAACCTGGAAGGGCAAAATCAAACTATAAGCTTAAGCAATGAAGCTGAAAAAGTTGAACCAACCTTTGGGGGCATTGCAAAAGGGGTTGAAGCAGTTTTACAAAGACTCAAGATTATTGAACAAGAAATCAGAGACTTGAAGCAAGAAATCCAAGGGCTGAGATATTATGAACATAGACTCCTCCTTGAGCTTCATCGCAAAGTGAACTACATAGCAACCTACAATGTTCAGGTGGAGGAGAGGAAAGTACCAAACATGTTTTATTTTGTAAAAACAGAAAACTACTCAAGGAGACTGGTGACCACAATGGTTTCTGGCTTGACTGCTCTCCGGCTTCACATGTTATGCGAATTCCGGGGACAAATGCATGTTGTTGAAGATCAAATGGGTTGTGAAATCATGCAAGTTGATAACATGGCTGTGAAGTCTTTGGCTCCATACATGAAGAAGTTCATGACATTGGTAACTTTTGCTCTTAAAATAGGTGCTCACCTTGCAGCTGGAATGGGGGAAATGATACCAGACTTGGGCAAGGAAGTGGCTCATTTGGCTGGCTCTTCACTACTCTTTGGTGCAGCTGGTGCAACTGCAGCTGGTGCTTTTGGGGCTGCTGCTATGGGTCGTAGAAACAGGTCAATGGAAGGTTCAAGGGGCATTCAACAAGATTTAAGAGCAGCACAGCAATGGGTGGTTGATTTCTTAAGGGAAAGGAGGTGCTCCTCAGGGAAGAATATTGCAGAAAAGTTTGGACTTTGGCGAGTAAGGTACAGGGACAATGGTCAAATTGCATGGATCTGTAGGAGGCACATTTACGCCAGATCTGCAGAGATAATTGAAGTGCCCATTTGA 4191 0.4159 MASNQNLKELQWVLQAINSEGLNLHSISFYLSQPTSGCYQETDNSININISKDNLPYFSHLLTTLAAAKTTRSTLKNLEFHRVEWESQQVTNLGILLGNNQSVQQVVFRRNRFNGKSLSELSDILKANKGIKEIMLSESSIGSVGAGLIASALMVNDSLEELQIWEDSIGSRGAEELSKMIEVNPTLKLLTIFDSNAITATPLISAVLARNRTMEVHVWSGENGEKSSKVVEFVPENSTLRIYKLNLSGACRVACSLGMNFTVKSLDMTGVKLKSRCAKEFRWVLEQNQTLKEVNLSRTCLKDKGIVYVAAGLFKNHSLQTLHLTGNWFSGIGVEHLLCPLSRFSALQMQANITLKCVTFGGGRTRIGRDGLAAIIQFLVTNETVRKLGIHDDESLRSDDFIKIFKSLEKNASLKCLSLQGCKGVQGETLLQTIMETLQINPWVEDIDLSRTPLHNSGKTTGIHQRLGQNENTEAEMDLLKEMPLTEPKSCRVFFCGQECAGKTTLCHSISQNFSASALPYLDQVRTIMNPVEQAVKTVGMKIKTFKDEDTKISIWNLAGQHEFFSLHDLMFPGHGSASFFIIISSLFRKPSNKEPKSTAEIEEDLQYWLRFIVSNSKKAVQQCMLPSVAVVLTHFDKINQASQNFQHTVDSIQRLRDKFQGFVDFYPTVFTVDARSSASVSKLTHHIRKTCKTMLQRVPRVYQLCNDLIQILSEWRSENYNKPAMKWKEFGELCQVKVPSLRIRSRHYNKEVVEMKRKAIATCLHNIGEVIYFDELGFLILDCEWFCGEALGQLIKLNVRKQHSSENNGFISRKELEKILKGSLQSPIPGMGSKVFENLDASDLVRMMLKLELCYEQDPSDPNSLLLIPSILEEGRGKPQRWQLSTPDCLYAGRHLECDDSSHMFLTPGFFPRLQARISLATFLFFPSVSPFSIVHLHNRIKALSNQQSATYSLEKYLISISINGIYIRVELGGQLGYYIDVLACSTKNLTETLRVIQQLIIPAIQNVCHGITLTENVIRPECVRNLTPPRYRRTQFASLQQLKQALLSLPADSMYDYQHTWSSVLDSGRSVLQEGFDLARDLLSDDDFREVLHRRYHDLYNLAQELQVPPENNLEGQNQTISLSNEAEKVEPTFGGIAKGVEAVLQRLKIIEQEIRDLKQEIQGLRYYEHRLLLELHRKVNYIATYNVQVEERKVPNMFYFVKTENYSRRLVTTMVSGLTALRLHMLCEFRGQMHVVEDQMGCEIMQVDNMAVKSLAPYMKKFMTLVTFALKIGAHLAAGMGEMIPDLGKEVAHLAGSSLLFGAAGATAAGAFGAAAMGRRNRSMEGSRGIQQDLRAAQQWVVDFLRERRCSSGKNIAEKFGLWRVRYRDNGQIAWICRRHIYARSAEIIEVPI. 1397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02970 1396 Gene3D - 490 695 IPR027417 -
Seca6g02970 1396 Pfam C-terminal of Roc, COR, domain 749 919 IPR032171 -
Seca6g02970 1396 Pfam Ras of Complex, Roc, domain of DAPkinase 492 620 - -
Seca6g02970 1396 PANTHER PROTEIN TORNADO 1 1 1395 - -
Seca6g02970 1396 Gene3D Ribonuclease Inhibitor 230 343 IPR032675 -
Seca6g02970 1396 Pfam Leucine Rich repeat 287 308 IPR001611 GO:0005515
Seca6g02970 1396 Pfam Leucine Rich repeat 315 337 IPR001611 GO:0005515
Seca6g02970 1396 SUPERFAMILY RNI-like 39 461 - -
Seca6g02970 1396 Coils Coil 1143 1170 - -
Seca6g02970 1396 Gene3D Ribonuclease Inhibitor 51 217 IPR032675 -
Seca6g02970 1396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 693 IPR027417 -
Seca6g02970 1396 Gene3D Ribonuclease Inhibitor 344 479 IPR032675 -
Seca6g02970 1396 SMART LRR_RI_2 156 183 - -
Seca6g02970 1396 SMART LRR_RI_2 128 155 - -
Seca6g02970 1396 SMART LRR_RI_2 316 343 - -
Seca6g02970 1396 SMART LRR_RI_2 288 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02970 Seca-Chr6 95653469 95658190 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02970 - - gmx:100784182 2405.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02970 6 95653469 95658190 Seca6g02970 6 95653469 95658190 ECH