Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02964 ATGGATATTTCAGACTACACAAGGATTGTTTTTGATAAACTTCAAAGATTTGAGCCAGAGCATGCTACAAAGATTATTGGATATCTTCTTCTGCAAGACCATGGTGAGCAAGAGATGGTTAAATTGGCTTCATGCTCAGACCATTTAATTTGTGAAGTGGCTCTTAGGGCCAGAACTGAGCTTCAAAGGTTGGCCGGTAAATCAATTCCACTCAACCCTCAAAGAGATTTAAGTCATTTGTCAGTAATCTCTCCTAGGACTCCTCCTACTTCAGTGGCAAGCTTCCATCCTACTTCGCCAGCAAGTTTCCAGGTTCTCTCTCCCTATTATAATCAACAGCCTGCTAGGAATACTATTGCAGAATTTATGCCAATAGATTACTTTGATTCTATCCCACAACTTCAAAAGCAGACCCCATTGTTCAGTGTGGAAAATCATATAGATACTGTAAATTCTGCAACTGCTAAAATCACCAATGATTACTATGGCTTAGATGCTTCAGTTGGAAATTTGAGGGTAAAAACTGGTAGAAGGTTTTCTAACATGTCTGAATTTCCAGTCAAGACCTGTCACTATTTCAACAAAGGTTATTGTAAGCATGGAAGTAGCTGCAGATACTATCATGGACAAGTTGTCCCTGAGATATTCTCTCAGATGCATGGAAATGAAACTCTTAATGACGATCAGGCCATTTCACCAGGGTCACTAGAGCGGTTAGAGTCAGAAATTGTTGAGCTCCTAAAACAAAGAGGCAATCCTATTTCAATTGCTTCCCTTCCAATGGCATACTATGATAAGTATAAAAAGGTACTGCAGGCAGATGGCTACCTAACTGAGAGCCAGAGACATGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTTATCAAATTGAATAATAGTATTCGGCTAATTGACAGGCCTCATGGGCAGCATGCAGTGGTTTTGGCAGAAGATGCTCCAAAATTCACAGGAAAGGGAGAGTTTGGTCAAAATATTAGTGCATCACGGCAATTATACCTGACATTTCCAGCTGACAGCACTTTCACAGAGGAGGATGTTGCAAACTACTTCAGCACTTTTGGGTGTGTTGATGATGTAAGGATTCCATGCCAACAAAGAAGGATGTTTGGATTTGTGACATTTGTTGATCCAGAAACTGTTAAAATGATCTTGGACAAGGGAAATCCCCATTATGTTCGTGGATCTCGGGTTCTTGCAAAACCTTACAAGGAGAAGCCAAAACTCATTGACAGGAAGTATCCAGATAGAAACGAGCATCCTGTCTTCTATTCACCACACTATGTAGACATTGACACTGAACTTACCTCAAGTATGATGTTCTTTCAAAGAAGTTGCGGGAACCCTCGATTTCTGAGGAGGCTGCTCCTCGAAGAGCAAGAACAGGCCCTTGAATTTCATAGAAGGCGTCTTGCAGAACTGCAACTGGCCCAAAAATCTCTTTCCAGTTCACCCCATTTAGGCACCAACATGGATGGATTAAAAGTTTCAGATGACCATTTCAATTTCCAGCCTGCAGAATCTTTCAGTGATGAGCAAAATGAAAAGGCTGGGAATACAGATGCTGATCAGACTGATGATGACAGGTTTGAATTGATTCCTAATAGCTTTCCCTTAATCCACAACAATACCATCCCCATTCAATCTTCAATAAATCAATAA 1680 0.4065 MDISDYTRIVFDKLQRFEPEHATKIIGYLLLQDHGEQEMVKLASCSDHLICEVALRARTELQRLAGKSIPLNPQRDLSHLSVISPRTPPTSVASFHPTSPASFQVLSPYYNQQPARNTIAEFMPIDYFDSIPQLQKQTPLFSVENHIDTVNSATAKITNDYYGLDASVGNLRVKTGRRFSNMSEFPVKTCHYFNKGYCKHGSSCRYYHGQVVPEIFSQMHGNETLNDDQAISPGSLERLESEIVELLKQRGNPISIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLIKLNNSIRLIDRPHGQHAVVLAEDAPKFTGKGEFGQNISASRQLYLTFPADSTFTEEDVANYFSTFGCVDDVRIPCQQRRMFGFVTFVDPETVKMILDKGNPHYVRGSRVLAKPYKEKPKLIDRKYPDRNEHPVFYSPHYVDIDTELTSSMMFFQRSCGNPRFLRRLLLEEQEQALEFHRRRLAELQLAQKSLSSSPHLGTNMDGLKVSDDHFNFQPAESFSDEQNEKAGNTDADQTDDDRFELIPNSFPLIHNNTIPIQSSINQ. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02964 559 MobiDBLite consensus disorder prediction 513 535 - -
Seca6g02964 559 Coils Coil 463 483 - -
Seca6g02964 559 Pfam OST-HTH/LOTUS domain 235 312 IPR025605 -
Seca6g02964 559 Gene3D - 338 414 IPR012677 -
Seca6g02964 559 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 529 - -
Seca6g02964 559 Gene3D - 145 219 - -
Seca6g02964 559 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 403 IPR000504 GO:0003723
Seca6g02964 559 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
Seca6g02964 559 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 210 IPR000571 GO:0046872
Seca6g02964 559 SUPERFAMILY RNA-binding domain, RBD 346 420 IPR035979 GO:0003676
Seca6g02964 559 MobiDBLite consensus disorder prediction 520 535 - -
Seca6g02964 559 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 336 411 IPR000504 GO:0003723
Seca6g02964 559 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 343 414 - -
Seca6g02964 559 SMART rrm1_1 337 407 IPR000504 GO:0003723
Seca6g02964 559 CDD RRM_AtC3H46_like 338 407 IPR034365 -
Seca6g02964 559 ProSiteProfiles OST-type HTH domain profile. 235 318 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02964 Seca-Chr6 95501207 95506543 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02964 - - gmx:100780955 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02964 6 95501207 95506543 Seca6g02964 6 95501207 95506543 ECH
Seca6g02964 6 95501207 95506543 Seca6g02964 6 95501207 95506543 PCT