Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02959 ATGACATTACAATCCCTGGTACTGGGTCAACCAGTCTTCATCTTTGTCCCGAGGGTACTCTGCAATCGGCCAATAATAATGCCGATGAATGCATTGGCCAAAAACAGTGGATACCCATTACCCTTGGTGTCAAAGTGTGTTGAACCATGCACTTCTGGAGGCTCTTTGGTTTCAGGGTATGGGGATGACTTTAAGCTGTTTGGCAGAGGTGGGTTGAGATGTTTGGGTAGAAGTAGTGTCTGTTTGAATGGAAACAAAGATGTTTCCAAAGAGAAATTGAAATTTATAAGGGAGTTACTGAAGAAGGGGATCATTCTGGCTGCAACTGTTTGTGGGACATTGGTGTTTGGATGTAAACAAGCCTTTGCTATGACTGTTATGGAACAGAGCAAACTGTTTCTTGGGAATGCATGGCCTAAGGTGTTACCAGTTCTTCAGATATTTAAGGAGCAAGGGGTGGTACTTGCTGTACTTTTGGCTCTTTCTGCTTTCTTCTCTATGGCAGAGACTTCAATTACTACACTCTGGCCTTGGAAGGTAAGAGAGTTAGCTGAAAAGGAGTCTGAAAATGGCGTCTTCAAACTACTCCGAAGTGATGTTACAAGATTCCTTACAACTATACTTATTGGCACAACTGTGGTTAATATTGGAGCAACAGCTCTGGTCACAGAAGCTGCAACTGCAATATTTGGTGAAGCTGGTGTTGGTGCAGCAACAGGAGTAATGACTGTTGCCATTTTGCTTCTCACTGAAATCACTCCAAAAAGTATAGCAGTCCACAATGCCACAGAAGTTGTTCGGTTTGTGGTCAAGCCAGTGGCCTGGCTTTCCCTGGTATTGTATCCTGTTGGAAGAGTTGTTACTTATCTCTCAATGGGGATGCTGAAGTTGCTTGGCGTAAAGGGAAGAAGCGAGCCATATGTTACAGAAGAGGAGCTAAAATTGATGCTAAGAGGTGCAGAATTAAGTGGGGCAATAGAGGAGGAAGAACAGGATATGATTCAAAATGTGTTGGAGATTAAAGAAACACAAGTTAAAGAGGTTATGACACCTCTTGTTGATATTGTTGCAATTGATGCAAGTGCAAGTCTTATAGATTTTCAAACCCTATGGACTGGACATCCATACTCAAGGGTACCTGTTTTTGAGAAACGCATTGATAATATAATTGGTATTGCATATGCAACGGATCTGCTGGATTTTCTTCAGAAGGGTGAGCTACTAGATACTACTCCTGTTCAAGAGTTGGCTCACATGCCTGTATATTTTGTGCCAGATTCAATGTCTATTTGGCGTCTTCTAAGAGACTTCCGATTCAAGAAGGTTCACATGGCTGTTGTTTGTAATGAGTATGGTGGAACTGTGGGAATTGTAACTCTGGAAGATATTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAACGACTCAAAGGAAGAGATTCGGAGAAAAACAGGCAACATAGTAATGCGAGATGAGGGTGTATTTGATGTGGATGCAAACACATCTATTGATCAGCTCTCTGAAGATTTGAACATCAAGATGCCCGAGGGCCACCAATACGAGACAGTATCAGGCTTTGTATGTGAAAATTTTGGTTCCATCCCTGAGATAGGTGAGTGCATTGAAGTAGTTCTTGAAAGGAAAAATGAAGATGATAATGATGCGTCCAATGCTGACCACCAGGATCCGAAAGAGGCTTTCAAACTTGAGATACTAGCAGGAAATACCAGAAAGGTGACCCATGTTCGGTTTACACGGATGAATGATGGTCACGAAATATTGGAGACAAAAGGAGTAACTCGCAAAGCCCCTAAACTGATGAAAAGAAAATAG 1836 0.4183 MTLQSLVLGQPVFIFVPRVLCNRPIIMPMNALAKNSGYPLPLVSKCVEPCTSGGSLVSGYGDDFKLFGRGGLRCLGRSSVCLNGNKDVSKEKLKFIRELLKKGIILAATVCGTLVFGCKQAFAMTVMEQSKLFLGNAWPKVLPVLQIFKEQGVVLAVLLALSAFFSMAETSITTLWPWKVRELAEKESENGVFKLLRSDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVGAATGVMTVAILLLTEITPKSIAVHNATEVVRFVVKPVAWLSLVLYPVGRVVTYLSMGMLKLLGVKGRSEPYVTEEELKLMLRGAELSGAIEEEEQDMIQNVLEIKETQVKEVMTPLVDIVAIDASASLIDFQTLWTGHPYSRVPVFEKRIDNIIGIAYATDLLDFLQKGELLDTTPVQELAHMPVYFVPDSMSIWRLLRDFRFKKVHMAVVCNEYGGTVGIVTLEDIVEEIVGEIFDENDSKEEIRRKTGNIVMRDEGVFDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCENFGSIPEIGECIEVVLERKNEDDNDASNADHQDPKEAFKLEILAGNTRKVTHVRFTRMNDGHEILETKGVTRKAPKLMKRK. 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02959 611 ProSiteProfiles CNNM transmembrane domain profile. 144 330 IPR002550 -
Seca6g02959 611 PANTHER HEMOLYSIN-RELATED 146 611 - -
Seca6g02959 611 FunFam Magnesium/cobalt efflux protein CorC 326 476 - -
Seca6g02959 611 SMART CorC_HlyC_2 489 589 IPR005170 -
Seca6g02959 611 SMART cbs_1 354 403 IPR000644 -
Seca6g02959 611 SMART cbs_1 420 468 IPR000644 -
Seca6g02959 611 Gene3D - 324 478 IPR046342 -
Seca6g02959 611 Pfam Transporter associated domain 490 588 IPR005170 -
Seca6g02959 611 Pfam Cyclin M transmembrane N-terminal domain 155 330 IPR002550 -
Seca6g02959 611 Pfam CBS domain 419 468 IPR000644 -
Seca6g02959 611 Pfam CBS domain 345 403 IPR000644 -
Seca6g02959 611 ProSiteProfiles CBS domain profile. 349 410 IPR000644 -
Seca6g02959 611 CDD CBS_pair_CorC_HlyC_assoc 345 465 IPR044751 -
Seca6g02959 611 Gene3D - 479 589 IPR016169 -
Seca6g02959 611 ProSiteProfiles CBS domain profile. 416 474 IPR000644 -
Seca6g02959 611 SUPERFAMILY FAD-binding/transporter-associated domain-like 487 591 IPR036318 GO:0050660
Seca6g02959 611 SUPERFAMILY CBS-domain pair 332 471 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02959 Seca-Chr6 95447488 95455745 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02959 - - gmx:100778907 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02959 6 95447488 95455745 Seca6g02959 6 95447488 95455745 ECH