Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02938 ATGCTTCATGAGCTTTGCCATAATGCCCATGGCCCTCATAATGCTAGCTTCTACAAGCTATGGGATGAACTTAGAAAGGAATGTGAGGAGTTGATGGCTAAAGGAATAACTGGCTCTGGAGAGGGATTTGACCTTCCAGGAAGGCGTTTAGGTGGTTATTCCCGACAACCTCCACTTTCATCTTTACGTAAAACTACACTTGCAGCTGCAGAGAAGAGATCACGGTTGGGGTCTCTTCTTCCATCTGGACCAAAACGCCTTGGTGGTGATAGTGTTATAATGGAGGCACTTAGTCCAGTACAAGCTGCTGCAATGGCTGCAGAAAGGAGATTACAGGATGACATATGGTGTGGTTCTCAATCTTGTGAACATTCAGATGATGAAAATGTTAACAATGAATCTGCTGACAATATTGTACATAAACGGAAAATTGTGGGAAGCTCGATACTAACAGACAATTCTACTCTACATTTGGATCTGACATCCCGAAAAAAAAGTCGTGCTAAGGATTCAAGTTTACCAATTCACTCATCTAGTACCTCTAAATTTGTAGATTTGACTAAGGACACATCAAAAATTGAATCTGTCATTGAACATCAAACTGGATCTCAACAAAAAAGTTTTGGATTAGAAAGCATTTCACATTCTCAATCTAGTTCAGAGGCAGGATGTAGTTCTGCAAATTTATCAACTCTATCTGGGACACAATCTGGTGGTGATAGAACACTTCACTCTGAAGAACCTGCAATGTGGGAGTGTTCGATGTGCACTCTGCTGAATAAAAAATTAGCTCCTATATGCGAGTTGTGTGGCTCGCAACAGCCAAAAGATGTTACTACCAAGTACAACACCTGGTCTTGTAAATTCTGTACGTTGGAAAACAGTGTGAAGTTGGAGAAATGCTCAGCTTGTGACCAGTGGAGATACTCTCATGGACCACCAGTGTCAACCCGGACGCCTAATCTGGGCACTTAA 975 0.4185 MLHELCHNAHGPHNASFYKLWDELRKECEELMAKGITGSGEGFDLPGRRLGGYSRQPPLSSLRKTTLAAAEKRSRLGSLLPSGPKRLGGDSVIMEALSPVQAAAMAAERRLQDDIWCGSQSCEHSDDENVNNESADNIVHKRKIVGSSILTDNSTLHLDLTSRKKSRAKDSSLPIHSSSTSKFVDLTKDTSKIESVIEHQTGSQQKSFGLESISHSQSSSEAGCSSANLSTLSGTQSGGDRTLHSEEPAMWECSMCTLLNKKLAPICELCGSQQPKDVTTKYNTWSCKFCTLENSVKLEKCSACDQWRYSHGPPVSTRTPNLGT. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02938 324 ProSiteProfiles Zinc finger RanBP2 type profile. 281 310 IPR001876 -
Seca6g02938 324 SMART zf_4 283 307 IPR001876 -
Seca6g02938 324 SMART zf_4 249 273 IPR001876 -
Seca6g02938 324 SUPERFAMILY Ran binding protein zinc finger-like 246 273 IPR036443 -
Seca6g02938 324 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 323 - -
Seca6g02938 324 ProSitePatterns Zinc finger RanBP2-type signature. 251 270 IPR001876 -
Seca6g02938 324 ProSitePatterns Zinc finger RanBP2-type signature. 285 304 IPR001876 -
Seca6g02938 324 Pfam WLM domain 1 112 IPR013536 -
Seca6g02938 324 Gene3D - 244 284 - -
Seca6g02938 324 ProSiteProfiles Zinc finger RanBP2 type profile. 247 276 IPR001876 -
Seca6g02938 324 MobiDBLite consensus disorder prediction 217 243 - -
Seca6g02938 324 ProSiteProfiles WLM domain profile. 1 112 IPR013536 -
Seca6g02938 324 MobiDBLite consensus disorder prediction 217 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02938 Seca-Chr6 95074408 95077528 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02938 K22685 - gmx:100795976 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02938 6 95074408 95077528 Seca6g02938 6 95074408 95077528 ECH