Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02914 ATGGACGAAGGTGAGGGAGGGTACGGTGAGAGCGGGGATCCCGTGGATCAGTTCCACCGTAACGAAGCTATTTCCGCCGTTGCCGACGAGGGTTTCCTGGGTGAAGAGGACGACGATTACGAGGATCTCTACAACGATGTCAATGTCGGCGAAGGGTTCCTTCAATCCTTGCGCAAGAACGAGGATTCAGGGTTTAGAAACGAGGACGTTGACGACAAGAAGCCGCCGCCGCCAGTGCAGGATGCCGGTGGGGTTTCGATTCCGGGTGTCGGTGGTAGCGGTGGTGCGGGGGAGGGTGGTGGCGGCGGCGGGGTTGTGGAATCGAGGGTCTCTGGGAGAGTTGATGGGTTTCAGAATCAGGGGTTTAGAGGGAATGAGGTTGGTGTCAAAGGGGGCGGTGGAGGTGGGATTAGGGTTGAATTAGGTCACCAATCTGCGAAATTGAATGAGATTGAGGAGCAGAGTGGTAATGATGGTAGTGGAGTTCAAGGGATTGGGCAGCAACCGCATGGTGGAGTTGCTGGGAGTGTAGGAAATGAGGGTTTGGTGAGACAAGGTCAAGGTGGTGGTGGTGGAGGGGGAAATCTTAACAGGGCTGGTGGTAATGGGGTTGGGAATAGTGTCAGTGCTGTTAATACTGGAGGAGGAGGAGGTGGAGGTGGAGCTGGTGTGGCTGCAGGTGCAGGTGGCGGTGGTGGTGGCACTGTATTATTTGTGGGTGATTTACACTGGTGGACTACTGATGCTGAGCTGGAAGCTGAGCTTTGTAAGTATGGGCAAGTGAAGGAGGTGAAGTTTTTTGATGAGAAAGCCAGTGGGAAATCAAAAGGGTATTGCCAGGTTGAGTTTTATGATCCTGGTGCTGCAACTGCTTGTAAAGAAGGGATGAATGGGCATATGTTTAATGGGAGGCCTTGCGTTGTTGCTTATGCATCTCCTTTTACTGTGAAGAAAATGGGAGAGGCTCAGATAAGTAGGAATCAACAGATGAACCAATCTGCAACTAACCAGGGAAGAAGGGGCCCTGGTGATGCTGGGGCTAAGCCTGGTGGTAGTAATGTTGGGACGGGTGGTAACTACCAAGGTGGAGATGGCAATAGAGGTTATGGAAGAGGTAACTGGGGGAGGGGGAATAATCCTGGGATGGGGAATAGAGGGCCTGTTAATCCAATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGTAATGGTGGAAATGGATTTGGACAGGGTATTGGTGCTACCCCGCCTATGTTGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCCATGGGTAGAATGGGCAGCTATGGAGGCTTTCCCGGTGCTCCAACACCCCCATTCTCTGGGATTTTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTTGCACCTCATGTTAATCCAGCCTTTTTTGGTAGAGGGATGCCTGTGAATGGTATGGGGATGATGCCCACATCAGGTATTGATGGTCCTAATATGGGAATGTGGTCGGATCCAAATATGGGTGGATGGGGTGGTGAAGAACCTGGTGGTGGCAAGGCTGGAGAGTCAAGTTACGGGGAGGAAGCTGCATCAGACCATCAGTATGGTGAGGTCAGTCATGACAGAGCAGGGTGGCCTAATGCTATGAGGGAAAAAGATAGAGGATCAGAAAGGGACTGGTCCGGTTCTTCTGAAAGAAGGTACAGGGATGATAGAGATCAAGTATATGAGAGAGATGCACCTAGAGAGAAAGATATGGGACATGACCATGAATGGTCAGAAAGAAGGCACCGTGATGATAGAGAGATGGGTCGAGAACGATCTCGTGATCGGGGACGATCTCGAGACCGTGACCGTGAAAGGGATCGGGATCGAGACCATGAACGGGACAGGTATAGGGAAGATAGGGACAGGTATGCTGATCATCATAGGTACAGGGACCGTGAAGCCGAGCATGATGAGGAGTGGGAGAGGGGACGGTCATCAAGGACTCACAGCAAATCACGATTATCACATGAGGAGGAACACCATTCTAGACCAAGAGATGCTGATTATGGGAAGAGGAGGCGGCTTACCTCTGAATAA 2106 0.5152 MDEGEGGYGESGDPVDQFHRNEAISAVADEGFLGEEDDDYEDLYNDVNVGEGFLQSLRKNEDSGFRNEDVDDKKPPPPVQDAGGVSIPGVGGSGGAGEGGGGGGVVESRVSGRVDGFQNQGFRGNEVGVKGGGGGGIRVELGHQSAKLNEIEEQSGNDGSGVQGIGQQPHGGVAGSVGNEGLVRQGQGGGGGGGNLNRAGGNGVGNSVSAVNTGGGGGGGGAGVAAGAGGGGGGTVLFVGDLHWWTTDAELEAELCKYGQVKEVKFFDEKASGKSKGYCQVEFYDPGAATACKEGMNGHMFNGRPCVVAYASPFTVKKMGEAQISRNQQMNQSATNQGRRGPGDAGAKPGGSNVGTGGNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGNGGNGFGQGIGATPPMLHPQSMMNQGFDPAFGGPMGRMGSYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGIDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPNAMREKDRGSERDWSGSSERRYRDDRDQVYERDAPREKDMGHDHEWSERRHRDDREMGRERSRDRGRSRDRDRERDRDRDHERDRYREDRDRYADHHRYRDREAEHDEEWERGRSSRTHSKSRLSHEEEHHSRPRDADYGKRRRLTSE. 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02914 701 Gene3D - 231 372 IPR012677 -
Seca6g02914 701 SMART rrm1_1 236 309 IPR000504 GO:0003723
Seca6g02914 701 MobiDBLite consensus disorder prediction 55 109 - -
Seca6g02914 701 MobiDBLite consensus disorder prediction 326 390 - -
Seca6g02914 701 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 639 IPR034772 -
Seca6g02914 701 MobiDBLite consensus disorder prediction 61 76 - -
Seca6g02914 701 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 306 IPR000504 GO:0003723
Seca6g02914 701 MobiDBLite consensus disorder prediction 540 701 - -
Seca6g02914 701 MobiDBLite consensus disorder prediction 1 23 - -
Seca6g02914 701 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 313 IPR000504 GO:0003723
Seca6g02914 701 MobiDBLite consensus disorder prediction 502 701 - -
Seca6g02914 701 MobiDBLite consensus disorder prediction 153 200 - -
Seca6g02914 701 CDD RRM_CFIm68_CFIm59 237 310 - -
Seca6g02914 701 SUPERFAMILY RNA-binding domain, RBD 233 341 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02914 Seca-Chr6 94694378 94702008 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02914 K14398 - gmx:100813748 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02914 6 94694378 94702008 Seca6g02914 6 94694378 94702008 ECH