Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02910 ATGCAGCAGCAGCTACGGCCGGCCACACTGGCGGCGCTCACGGCGGCGCTGCTCCTCTTCACCGCCGCCAACATGGCCAACGCGCACAACATCACCCGCATTCTCGCCCAGCACCCTGAGTTCTCCACCTTCAACCACTACCTAACCCTAACGCACCTTGCGCCGGAGATCAACCGCCGGACGACAATCACCGTCTGTGCCGTGGACAACGCCGCCATGAACGACCTCCTCTCGAAGCATCCGTCGATCTACACCATCAAGAACATCCTCTCCCTCCACGTTCTCCTGGACTACTTCGGAGCGAAGAAGCTCCACCAGATCACCAACGGAACCGCCCTAGCCGCCACAATGTACCAGGCCACCGGCTCTGCCCCGGGATCCTCGGGATTCGTCAACATCACCGACCTTCACGGCGGAAAAGTCGGATTCGGCGCTGAGAACAATGACGGCACACTCTCCGCGTCGTTCGTTAAATCCGTTGAGGAAATACCTTACAACATTTCAGTTATCCAGATCAGCAAGGTTCTCCCCTCTGCCGCAGCGGAAGCCCCTACACCCGCACCCAGCCAGCAAAATCTCACCGCCATTATGTCCAAGCACGGTTGCAAGGTCTTTGCCGACACACTTTCCGCCTCTCCCGACGCTCTCAACACCTTCACTGACAACCTCGACGGCGGATTAACCGTTTTCTGCCCCGGCGACGACGCCTTCAAGGCTTTTCTTCCGAAGTTCAAGAACCTAACCGCTTCCGGTAAGGTCGCGCTCCTCGAGTTCCATGGTGTCCCCATTTACCAGTCCATGGCTATGCTCAAATCTAACAATGGACTCCAGAACACGCTCGCCACTGACGGTGCTAACAAGTACGACTTCACCGTTCAGAACGACGGCGAACAGGTCACTCTCAAGACGAAGGGTGTTACAGCAAGGATAACTGACACGCTCATCGATGAGCAGCCGCTCGCGATCTACGCCATCAGCAAGGTCCTCCTTCCTGAGGAGTTGTTCAAGGCCGAGGCACCGGCGCCGGCGCCTGCTCCGGAACCCGCCGCTGCCGACGCTCCCGAGGCGCCGAAGAAGAAGACTAAGAAGAAGAAGGCCGCCGATGCGCCTGCCGATTCCAGTTCCGATGCGCCTGCAGATTCGCCGGACGATGCCGCCGATCAGACCGCCGATGACTCTAACAGCGCCGTTAGGGTTGACGGTATCGTGGTCATGGTTTTGGCTTTGGTTTTTGGTTTTCTACTGCTGTGA 1251 0.5819 MQQQLRPATLAALTAALLLFTAANMANAHNITRILAQHPEFSTFNHYLTLTHLAPEINRRTTITVCAVDNAAMNDLLSKHPSIYTIKNILSLHVLLDYFGAKKLHQITNGTALAATMYQATGSAPGSSGFVNITDLHGGKVGFGAENNDGTLSASFVKSVEEIPYNISVIQISKVLPSAAAEAPTPAPSQQNLTAIMSKHGCKVFADTLSASPDALNTFTDNLDGGLTVFCPGDDAFKAFLPKFKNLTASGKVALLEFHGVPIYQSMAMLKSNNGLQNTLATDGANKYDFTVQNDGEQVTLKTKGVTARITDTLIDEQPLAIYAISKVLLPEELFKAEAPAPAPAPEPAAADAPEAPKKKTKKKKAADAPADSSSDAPADSPDDAADQTADDSNSAVRVDGIVVMVLALVFGFLLL. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02910 416 Gene3D FAS1 domain 199 331 IPR036378 -
Seca6g02910 416 ProSiteProfiles FAS1/BIgH3 domain profile. 28 176 IPR000782 -
Seca6g02910 416 SMART fasc_3 64 179 IPR000782 -
Seca6g02910 416 SMART fasc_3 228 332 IPR000782 -
Seca6g02910 416 SUPERFAMILY FAS1 domain 34 176 IPR036378 -
Seca6g02910 416 Gene3D FAS1 domain 26 177 IPR036378 -
Seca6g02910 416 ProSiteProfiles FAS1/BIgH3 domain profile. 189 329 IPR000782 -
Seca6g02910 416 MobiDBLite consensus disorder prediction 353 370 - -
Seca6g02910 416 FunFam Fasciclin-like arabinogalactan protein 10 182 332 - -
Seca6g02910 416 MobiDBLite consensus disorder prediction 339 394 - -
Seca6g02910 416 FunFam Fasciclin-like arabinogalactan protein 2 27 169 - -
Seca6g02910 416 SUPERFAMILY FAS1 domain 185 332 IPR036378 -
Seca6g02910 416 Pfam Fasciclin domain 202 331 IPR000782 -
Seca6g02910 416 Pfam Fasciclin domain 39 116 IPR000782 -
Seca6g02910 416 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 9 398 IPR033254 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02910 Seca-Chr6 94559766 94561016 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02910 - - gmx:100810878 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02910 6 94559766 94561016 Seca6g02910 6 94559766 94561016 ECH