Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02903 ATGAAACCACATAAGCTTCCTTCCTCGGCACTCTCACGTGCGCTCTCACGTGCCCTGAGCTCCTCCACCGCATCGCCGCAATGTGGATCGGCGTTTCCCCTGAAGACAGTGACCACCGCGAACTTCGAACCCTCGCTGGCGGAGCTCCGGCGCCACGTCAGGTCATCGGACTTCGTGGCCATCGACCTCGAGATGACCGGCGTCACCAGCGCCCCCTGGCGGGAGTCCTTGGAGTTCGACCGCTCCGACGTTCGATACCTCAAGGTCAGGGACTCCGCAAGCAGGTTCGCCGTCGTCCAATTCGGCGTCTGTCCCTTCCGTTGGGAATCTTCCAATGACTCCTTCGTCGCTTATCCAAGATTGCTCTTTGTCAGGTACAATTTCTATGTTTTTCCACGTCAGGAGCTTGCGGGTTTTGGTCCATGTAATGAATTTCTCTGCCAGACAACATCAATGGATTTCTTGGCTAAATACCAGTTTGATTTTAATGCATGCATACATGAAGGAATATCTTATTTATCCAGAGAACAAGAAATGGAAGCAATAAGGAGTTTGAATTCAACATATGATAGTGAGTGGTCAGACATTTGCAAATTAAAAGATGTTAGGGACATACCATTGGTCAGCATGACAGACATTTTGTTCACTGCACGAATGAAAAATAAGTTAAGTGAGTGGCGTGATGGGTTATTACAGGAGCGAAATCAAGAAGATCAAATTCAAGGAATTTCAAAAGACTCAAAACAACAATTTGAAGTGATTTTCTTTAAGATGCATCCAGCTCTCAGGCTTAATGGATTCACCTCTCATCAGCTTAAATTGATTCAGTTGGTCATCAAAAAGCACTTCAAAGATCTTTTCTATGTCAGTGTCAACAATGAGACTTCTGGTTCACAACAAATAGTTGTATATACAGACTCAAAGGATGAATTAAACTTACTTCTGAAGGAGGTGAAAGAGGAAAATCACAGGGCTGAAGAGATGAAGATCCAAGCTGCAGTAGGATTTCGCCATGTTATTGATCTCCTTTCATCAGAACAGAAGTTGATAGTTGGTCACAACTGTTTTCTGGATATTGCTCATGTCTACAGCAAATTCATTGGTCCTCTTCCAGGGACTCCTGAAGAGTTTGTTGCCTCTGTTAACAAGTGCTTTCCACACATTGTTGACACCAAAATACTCCTGAATACTAATTTTATGCTCCAAGAAAGGATGAAAAGGTCCAGAAAATCACTGGCTGCTGCATTTGCTTTGTTTTGTCCACAAATTGCTGCTGGCTCTAGAAGCACTGACCTAGGTTCGCCATCACATGTGAAAGTGGACATTGAAGTTGATGATTCGAGGTCATCCAGCTGGAATCCTGGAGGCAAGCATGAGGCAGGATATGATGCATTCATGACTGGATGCATCTTTTCCCAGTTATGCAGTGATTTAGGAGTTGATTTTAAGCAACATGAATCATCAAAACAATTAGCCCTCAATGAGAAACTACAAAAGTACATTAATCATCTATATCTTAGTTGGATGCATGGGGACATTATTGATCTAAAAACTGGTGATAAGGTTGCAGATTCTTCACCAAGCAATAGCCTCAAGAGGCGGTACCCAAAAATTTTGTTTGAGAACATTGTTATTATTTGGGGATTTCCTTCTAAGCTGAAAGCAAATGAAGTTAGAGAGTGTATATCCAAAGTTTTTGGTCCAACTTCTATAGTTTCTGTCTACCACTTGGATGCAACTTCAGTGTTCGTTCAGTTTAGCAAGACTGAACTAGTTTCCGACTTTCTTCTATTGAAGGACACCTTAGAGAGAAGTGATGGTCCAATCTTGGTTTTGCATCCGCTGGCAAAGCTTTTGGAAGGTGGAAATACATATGCTGCTAATTATGATACTTACAAAGAAATATGTGGTTCACCCTTCTCAGAAGGTCTGTTTGCTGATCAGGCTAAGGCAGTTGGTATAAAGTGGAAGACCAAATTAATAGAATACAATATAGCATTGGGGAACGAAGAACATGAAAATCTAAGTGTACAAGATAATGTAAATACAGCTATGAAGTTTGTAGAAACAACCGAGCCAAACACAATTGGTCAGTTAAGAAATGCTACACCTTGTGGGCAAGTCTCGGCCTTTGAGATTGAAGATTCTTGTGCCGCAGAAGCCAACTTGTGA 2172 0.4236 MKPHKLPSSALSRALSRALSSSTASPQCGSAFPLKTVTTANFEPSLAELRRHVRSSDFVAIDLEMTGVTSAPWRESLEFDRSDVRYLKVRDSASRFAVVQFGVCPFRWESSNDSFVAYPRLLFVRYNFYVFPRQELAGFGPCNEFLCQTTSMDFLAKYQFDFNACIHEGISYLSREQEMEAIRSLNSTYDSEWSDICKLKDVRDIPLVSMTDILFTARMKNKLSEWRDGLLQERNQEDQIQGISKDSKQQFEVIFFKMHPALRLNGFTSHQLKLIQLVIKKHFKDLFYVSVNNETSGSQQIVVYTDSKDELNLLLKEVKEENHRAEEMKIQAAVGFRHVIDLLSSEQKLIVGHNCFLDIAHVYSKFIGPLPGTPEEFVASVNKCFPHIVDTKILLNTNFMLQERMKRSRKSLAAAFALFCPQIAAGSRSTDLGSPSHVKVDIEVDDSRSSSWNPGGKHEAGYDAFMTGCIFSQLCSDLGVDFKQHESSKQLALNEKLQKYINHLYLSWMHGDIIDLKTGDKVADSSPSNSLKRRYPKILFENIVIIWGFPSKLKANEVRECISKVFGPTSIVSVYHLDATSVFVQFSKTELVSDFLLLKDTLERSDGPILVLHPLAKLLEGGNTYAANYDTYKEICGSPFSEGLFADQAKAVGIKWKTKLIEYNIALGNEEHENLSVQDNVNTAMKFVETTEPNTIGQLRNATPCGQVSAFEIEDSCAAEANL. 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02903 723 Gene3D - 268 521 IPR036397 GO:0003676
Seca6g02903 723 Gene3D - 36 215 IPR036397 GO:0003676
Seca6g02903 723 Coils Coil 308 331 - -
Seca6g02903 723 SUPERFAMILY Ribonuclease H-like 35 487 IPR012337 -
Seca6g02903 723 Pfam CAF1 family ribonuclease 37 471 IPR006941 -
Seca6g02903 723 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 37 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02903 Seca-Chr6 94377764 94382959 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02903 K01148 - gmx:100808217 1182.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02903 6 94377764 94382959 Seca6g02903 6 94377764 94382959 ECH