Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02902 ATGTCGCAGGAAAAGGGTCGGCCACTTCCAAAATTTGGTGAATGGGATGTCAATGATCCAGCCTCAGCTGAGGGGTTCACAGTGATTTTTAATAAGGCTAGGGATGAGAAAAAGACAGGCGGCAATCCTGAGTCGCCAGGAAAGACTGCCCCTGATCCTCATAGCAAACCTGCATTAGATCCTGGCAAACCTCAGAGTGTAAGATGTTCTTCATTATATATACATATACATGCACAGCTGTTTGTTATATATAATCTAAACACAAAATTGTTTTCCCATCTGAAGAGGCAAGTTTTAAGCTTTCAAAAGTGCTAA 315 0.4159 MSQEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNPESPGKTAPDPHSKPALDPGKPQSVRCSSLYIHIHAQLFVIYNLNTKLFSHLKRQVLSFQKC. 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02902 104 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 3 53 IPR040387 -
Seca6g02902 104 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 4 39 IPR008700 -
Seca6g02902 104 MobiDBLite consensus disorder prediction 32 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02902 Seca-Chr6 94364697 94369135 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02902 - - aprc:113854386 135.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02902 6 94364697 94369135 Seca6g02902 6 94364697 94369135 ECH