Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02901 ATGGGCACTGATGATGAGTATTATCCATTGTTTGAGACAAAGAGAGGGAAAGGAAGGGTCGCTTACAAGATCTTCTCTTTCTCGTTGTTTTTGGGAATTTGCTTTATCTGGGTTTACAGAGTGAGTTACATACCCAGTCGTCCCAGATCACAAGGTAGTGAATATTGGGGTTGGATTGGTTTGCTTTTTGCTGAACTATGGTTTGGTCTTTACTGGCTCCTCCGTCATGCCCTCAGATGGAACCCTCTATTCAGGCAACCCTTCGCCCACACACTATCTCAAAGATACGAGAATATATTGCCAGGAGTGGACATCTTTGTGTGTACGGCGGACCCAGCAATTGAGCCACCGGTGATGGTGATAAACACAGTGTTATCCGTAATGGCTTATGAGTATCCAACAGAGAAGCTGAGTGTGTATCTTTCAGATGATGCTGGATCTCTTATTACATTCTATGCTCTCTTGGAAGCATCCAACTTTGCCAAGCATTGGTTGCCATTCTGTAAGAGATTCAAAGTGGAACCTACATCACCTGCTGCTTATTTTAAGACTATTACCTCACTCACTTACCCAAATAATGCCAAAGACTTGGTCGCCATCAAGAAATTGTACCAAGATATGGAAAGTCGAATAGAAAATGCAGCCAAGCTAGGTCAGGTAGCAGAGGAAGTACGTTCAAAGCATAAGGCATTCTCTCAGTGGGATTCATATTCTTCTCGACATGATCATGACACAATTCTTCAAATATTACTTCATGGAAAGGACTTGAGTGCCAAAGATGTAGAAGGGAACGTTATGCCCACCTTGGTATATTTGGCTCGCGAGAAGAGACCCCATTTTCCACATAATTTCAAAGCTGGAGCCATGAATTCACTGATAAGGGTGTCATCAATGATCAGTAATGGGAAAGTCATTCTCAATGTTGATTGTGACATGTACTCAAATAATTCCCAATCTCTAAGAGATGCACTCTGCTTCTTCATGGATGAAGACAAAGGCCATGAAATTGCTTTTGTGCAGACACCCCAGAACTTTGAGAATGTTACAAAGAATGATCTATATGGTGGTGCTTTACGAGTATGCTATGAGTTAGAATTCCATGGCATGGATGGATTTGGTGGGCCTATGTATATTGGTACTGGCTGCTTTCACAGAAGAGACACACTCTGTGGAAGAAAATTCAGTGATCAATACAAGAATGATTGGGAGAGTGCAGATAAGAATATTGACCAAATGACAGAAGCAAGTTTGCATGAACTTGAGGAAAAATCAAAGGCTCTTGCAAGTTGTACCTATGAGGAAAACACATCATGGGGAAAAGAGATGGGATTATTATATGGTTGTTCAGTGGAGGATGTGATAACAGGATTATCTATTCAATACCGAGGATGGAAATCAGTGTACTATAATCCACCAAGGAAAGCTTTCTTAGGTGTAGCTCCAACCACCTTGCCAGAAACACTTGTTCAGCATAAGAGATGGTCTGAAGGAGGCTTTCAAATTTTGCTCTCAAAGTTCAGTCCTGCATGGTATGCTCTTGGATTGATTAGTCCAGGTCTCCAAATGACATATTGCTACTATGATCTATGGGTGTTTAATTGCTGGCCAACTCTATATTACTGCATCATCCCTTCACTCTGTCTCCTCAAAGGCATTCCCTTGTTTCCACAGATTTCAAGCCCATGGTTCATACCTTTTGCATATGTCATGATTGGGGATTCTACTTACTGCTTGTTAGAGTTTCTATGGTTAGGAGGCACAATGCAAGGTTGGTGGAATGACCTGCGGATGTGGCTGTATAAGAGAACAAGTTCTTACCTTTTTGCTTTTGTTGATACCATCTTGAAGTCTTTCGGGTTTTCAGATTCAGCCTTCACAATATCTGCCAAGGTAGCAGAAGAAAATGTTTCTAAACGATATGAAAAGGACATTATGGAGTTTGGAAACTCCTCCCCAATGCTTACTATATTGGCAACACTTGCATTGCTCAATTTGTTTTGTCTTGTTGGCGTGTTATTAAAGCAAGTAGTCATGAGTGAAGGGGGTCTTAGATTTTGTAAGACAATGACAATGCAAGTTTTACTAAGTGGGGTTTTGGTTCTCATCAATATACCAGTGTACCAAGGCCTTTTCCTAAGGAAAGATAAGGGAAGATTGCCAAGTTCTGTTGCAGTTAAATCAACAGCATTGGCTCTAAGTGCATGTGTCCTTTTTACTGCCCTCGTGATAGAGATGAAGCCAGGGCTACTCAATGTTGCCATTGCGGTGTTAATATTATCCAGCCTGAATGCAGTGCTTGGGATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCTCATAATGTTCAATATGAAGGGGATACAGTCCATGCTTCATTTGTTGTTATCAGTGTTGATGCATCTTGGCAATTTAATCAAGAAGGTTTAGACCTTGTGGTGAAAGGACCTTCTGGTGATCAAATTCAAGATTTTCGTGACAAGATAAGTGAGAAATTCGAATTTGTGGCTCGAAACAGAGGACCCTATCGCTTCTGCTTCAGCAATAAGTCTCCTTATCGTGAAAAAATTGATTTTGATGTGCATTCTAACCATTTCTCAAACTTTGATCAGCATGCAAAAGATGAGCATTTTAACCCACTGTTAGAACAGATAGTGAAGTTAGAGGAAGCTCTTTTTAACATTCAGTATGAACAACATTGGCTTGAGGCTCAGACAGAACGCCAGGCAATAGTAAATAATGCAATGAGTTCGAGAGCAGTTCACAAGGCGATGCTTGAATCAGCAGCACTAATCGGTGCGAGTTCCTTACAAGTTTATCTTCTTCGCAACCTCTTCGAAAGAAAGCTTCACATGTAG 2856 0.4086 MGTDDEYYPLFETKRGKGRVAYKIFSFSLFLGICFIWVYRVSYIPSRPRSQGSEYWGWIGLLFAELWFGLYWLLRHALRWNPLFRQPFAHTLSQRYENILPGVDIFVCTADPAIEPPVMVINTVLSVMAYEYPTEKLSVYLSDDAGSLITFYALLEASNFAKHWLPFCKRFKVEPTSPAAYFKTITSLTYPNNAKDLVAIKKLYQDMESRIENAAKLGQVAEEVRSKHKAFSQWDSYSSRHDHDTILQILLHGKDLSAKDVEGNVMPTLVYLAREKRPHFPHNFKAGAMNSLIRVSSMISNGKVILNVDCDMYSNNSQSLRDALCFFMDEDKGHEIAFVQTPQNFENVTKNDLYGGALRVCYELEFHGMDGFGGPMYIGTGCFHRRDTLCGRKFSDQYKNDWESADKNIDQMTEASLHELEEKSKALASCTYEENTSWGKEMGLLYGCSVEDVITGLSIQYRGWKSVYYNPPRKAFLGVAPTTLPETLVQHKRWSEGGFQILLSKFSPAWYALGLISPGLQMTYCYYDLWVFNCWPTLYYCIIPSLCLLKGIPLFPQISSPWFIPFAYVMIGDSTYCLLEFLWLGGTMQGWWNDLRMWLYKRTSSYLFAFVDTILKSFGFSDSAFTISAKVAEENVSKRYEKDIMEFGNSSPMLTILATLALLNLFCLVGVLLKQVVMSEGGLRFCKTMTMQVLLSGVLVLINIPVYQGLFLRKDKGRLPSSVAVKSTALALSACVLFTALVIEMKPGLLNVAIAVLILSSLNAVLGIRFVIDREECFSHNVQYEGDTVHASFVVISVDASWQFNQEGLDLVVKGPSGDQIQDFRDKISEKFEFVARNRGPYRFCFSNKSPYREKIDFDVHSNHFSNFDQHAKDEHFNPLLEQIVKLEEALFNIQYEQHWLEAQTERQAIVNNAMSSRAVHKAMLESAALIGASSLQVYLLRNLFERKLHM. 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02901 951 FunFam Cellulose synthase-like protein E1 235 405 - -
Seca6g02901 951 SUPERFAMILY Nucleotide-diphospho-sugar transferases 121 545 IPR029044 -
Seca6g02901 951 SMART EMP24_GP25L_2 767 946 IPR009038 -
Seca6g02901 951 FunFam Cellulose synthase isolog 93 189 - -
Seca6g02901 951 Pfam Cellulose synthase 103 401 IPR005150 GO:0016020|GO:0016760|GO:0030244
Seca6g02901 951 Pfam Cellulose synthase 423 740 IPR005150 GO:0016020|GO:0016760|GO:0030244
Seca6g02901 951 Pfam emp24/gp25L/p24 family/GOLD 774 946 IPR009038 -
Seca6g02901 951 ProSiteProfiles GOLD domain profile. 775 862 IPR009038 -
Seca6g02901 951 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 235 398 IPR029044 -
Seca6g02901 951 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 10 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02901 Seca-Chr6 94354367 94364216 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02901 9 741 Glycosyltransferase AT1G55850 57.085 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02901 - - cave:132173712 1327.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02901 6 94354367 94364216 Seca6g02901 6 94354367 94364216 ECH