Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02897 ATGGGTATTGGAAATCAGGAGGCAATCAATCAGTTGCAGTCCCTGATGGAAAATGTGGATGAGCAACAGAAGAACACATTCCAGAATATGCACCAGGGCTATCCAACTGAAACATTAGTACGGTTTCTCAAAGCTAGGGACTGGAATGTTGCCAAAGCCCATAAAATGTTAATTGATTGTTTACATTGGAGACTGGAAAATGAGATTGACAAAGTTTTAGAGCAGAAGCCAATCCCTGTGGATCTGTATAGAGCCATGCGAGATTCTCAACTCGTAGGAATGTCTGGTTACTCAAAAGAGGGTCTACCAGTCATTGCTGTTGGTGTTGGGCTCAGTACATATGACAAAGCATCTGACAAATACTATATACAATCACACATCCAAATGAATGAATATAGGGATCGGGTGATCTTGCCAACAGCTACAAAGAAGCATGGACGATACATTGGCACCTGTGTGAAAGTCTTGGATATGACTGGTTTAAAATTTTCAGCACTGAACCAATTGAGGCTTTTGACTTCTATATCTACAATAGATGACTTGAACTACCCTGAAAAGACAGATACATACTATATTGTTAATGCACCATATATATTCTCAGCATGTTGGAAGGTTGTAAAGCCTCTTCTGCAAGAAAGAACAAGGAAGAAAATCCAGGTGCTGCAAGGTTGTGGGAAGGAGGAATTACTGAAGGTAAACATCATTATCTTCAAATATCTACTTGAGCTCTCACAGTATCATCTACACCCTATATTATTGAAAATAAGTGCATCAGTTGTATTATGCTTCATATCTAGGTTTAACTTAATCCATTGCACATCATTTTAG 828 0.3877 MGIGNQEAINQLQSLMENVDEQQKNTFQNMHQGYPTETLVRFLKARDWNVAKAHKMLIDCLHWRLENEIDKVLEQKPIPVDLYRAMRDSQLVGMSGYSKEGLPVIAVGVGLSTYDKASDKYYIQSHIQMNEYRDRVILPTATKKHGRYIGTCVKVLDMTGLKFSALNQLRLLTSISTIDDLNYPEKTDTYYIVNAPYIFSACWKVVKPLLQERTRKKIQVLQGCGKEELLKVNIIIFKYLLELSQYHLHPILLKISASVVLCFISRFNLIHCTSF. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02897 275 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Seca6g02897 275 Gene3D - 4 234 IPR036865 -
Seca6g02897 275 Pfam CRAL/TRIO, N-terminal domain 8 59 IPR011074 -
Seca6g02897 275 SUPERFAMILY CRAL/TRIO domain 82 231 IPR036865 -
Seca6g02897 275 Coils Coil 5 25 - -
Seca6g02897 275 CDD SEC14 91 231 IPR001251 -
Seca6g02897 275 SMART sec14_4 86 245 IPR001251 -
Seca6g02897 275 SUPERFAMILY CRAL/TRIO N-terminal domain 6 74 IPR036273 -
Seca6g02897 275 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 79 232 IPR001251 -
Seca6g02897 275 Pfam CRAL/TRIO domain 90 226 IPR001251 -
Seca6g02897 275 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02897 Seca-Chr6 94320854 94326389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02897 1 232 Acyl Lipid Metabolism Gene Families AT5G47730 70.259 1.83e-125 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02897 K26544 - gmx:100817955 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02897 6 94320854 94326389 Seca6g02897 6 94320854 94326389 ECH
Seca6g02897 6 94320854 94326389 Seca6g02897 6 94320854 94326389 PCT