Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g02851 | ATGGCTTCCCCTAATCAACCACCACCTCCCACTTTCGACATGCACTCCTTCTTCAATCCCCCAAACCCTAACCCTAACCCCAACCCTTCTTCACCATTCCCTCCCTCCGCTCCTCCACCACCTCCTCCTTCTTCCTCCTCATCCTACCCTCCACCCACTGGTCCCTTCTCCGCCACCCCTTTCCACCACAACTTCCCCTTCGACCACCTCCCAATACACCCCAACCACCACCTCCAACACCGTTCCCTTTCCTTCCCCACCCCACCTCTTCAACCCCAACCCATCCCTCCCCCTTCAAACCCCAACGCCGGTGCCCGCCTCATGGCCCTCCTCAGCGCCCCTCCTCCGCCGCCGACTCACCAACAACCCGCCTCTGTCGCCCCCTTCTCTTCCGATTTTTCTGCCGTCGCCAGTTCGCCCCTCGTTCCACCCTCCATGGGCGGTGCCTTGACCGCTGCCAATGCCGCTGCCGCCGCGCTGATTCGGCTGCCGAGCAGTAAGGTCCCCAAGGGAAGGCATTTGATTGGGGAGCATGTTGTGTATGACGTGGACGTTAGGTTGCCTGGGGAGGTACAGCCTCAGCTTGAGGTCGCTCCAATAACCAAATACGGGTCGGATCCTAACCCGGTTCTGGGTCGACAGATTGCTGTGAATAAGTCGTATATATGTTATGGACTGAAACAGGGGAACATCAGGGTGCTCAACATTCACACTGCAGTGAGATCTTTGCTCAGAGGTCACAATCAGAGGGTCACAGATTTGGCGTTCTTTGCTGAAGATGTTCATCTCTTGGCTAGTGTTGGCACAGATGGCCGTGTTTATGTGTGGAAGATCTCTGAAGGTCCCGATGATGATGATAAGCCTCAAATTACTGCCAATATTGTTATTGCTGTCCAAATAGTGGTAGAGGAAAAAGTTGATCATCCCCAAATTTGCTGGCACTGCCACAAACAAGAGATTTTGATAGTTGGTATGGGAAAACATGTTCTGAGAATTGATACCACAAAAGTTGGAAATAGTGAAGCCTTTGTGGCAGAGGATCCTCCAAAATGTCCAGTTGACAAGCTCATTGATGGGGTTCAACTTGTAGGCTCACATGATGGGGAGGTGACTGATTTGTCAATGTGCCAATGGATGACAAATCGATTGGTATCTGCTTCACAAGATGGCACGATAAAGATATGGGAAGATCGGAAGACTCAACCTCTTATGATTTTGAAACCACATGATGGCCATCCTGTTTTTTCTGCTACATTTTTTACTGCTCCACACCAGCCTGATCATATTGTCCTTATCACAGCAGGACCACAAAATCGGGAAGTGAAGCTTTGGGTCTCAGCAGGCGATGAAGGTTGGCTGCTCCCTAGTGATGCTGAATCTTGGAGATGCACTCAGACATTGGAATTGAAGAGTTCAGCTCAACCATCTCCTAAGGATGCATTCTTTAATCAAGTTGCAGCATTGCCTCATGCAGGTCTGCTTTTACTTGCAAATGCCCAGAGGAATGCTATATATGCTGTGCACTTAGAATATGGTCCTAATCCAGAATCAACACGCATGGATTATATAGCTGAGTTTACTGTGACCATGCCCATTCTGAGTTTTACTGGAACAAGTGATATATTACCTCATGGTGAACATGTTGTTCAGGTTTATTGTGTTCAGACACAGGCTATTCAGCAATATGCTTTGGATTTAGCACAATGTTTGCCTCCGCCATTGGAAAATGTGGGACTAGAGAAGTCAGATTCCAGTGTTTCCCGAGATACAATTACTGTTGAAGGATTTGCCTCTTTAGACTCATCTGCAGGTAGAATGTCTGAAATGTCTTTGGCCAGTTCTGCTCCGAAAACAATGATACAAGCAAGCAACACTGAAAGTGGTCTTGTGGCAAGATACCCTTTAAGCTCTAGCCATATTGAGGCACCTATTTCTAAAGAAATCAGCAGTTCAAATATTGAGGCTAAACCTGTTACATTGGCTCCTTCTAGCAGTGATGCTGATATTGTTTGTGTTCCTTCTCCACCTCTTCCTTTGAGCCCAAGGTTGTCCAGGAAGCTTTCTGATTTTAGGAATCCACAATCTAACCTGAGTGATCATGTTGGGGACCAACCTGTTAATGATTATTCAGTTGACAGACAAATGGATACCATTCACAGGAACTTGTCTGATCCATTGAATAATGATTTAAAGAGTGATGAAAAGAAAATCAAGCAGGATGACATTTCTAGTGTACTTAATCATTCTGTCATGTTTAAGCAACCAACTCATCTGGTTACACCGTCCGAGATCATAAAAGCTGGTTCCTCCTCTGAGACTAATATAATTGATAGAAAGAATGAGGGAGAAACAAAGATCCAGGATGTGGTTGATGTGGGTAATGCTGAAGTGGAAGTGAAAGTGGTAGGTGAAACAAGATCTAATCAAAGTGATGAATTTGGCCGGCAAGGGCCACAACAAAACTCAGTTTCTGATAGTAAAGAAAAATTCTTCTGCTCTCAGGCTTCAGATCTTGGTATTGAGATGGCCCGAGAATGCCGTGCGATATCTGGGGAAACTTACATTACAGAGGAACCTGGACAAGTTGATTCTATTGTAGGAGACTCACTGGTCCAACCTTCTAATGCCAATGAGGATGGACTCCAAGACTTGGCAAAAGATGTCCATGAAAAGGTTTCTGACTCATCTACATCCTTGGCAGTACCACCATCACCTGCCCCTAATACAAAAGGGAAGAGACAAAAGGGTAAAAATTCTCAAGCATCTGGTCCATCTTCCCCATCTCCAAGTGCTTGCAATTCAACTGATTCATCCAATGAGCCAAATGGAAATCCTAGCCTCCCATCTACTGAAAATGCTGTTCCTCAAATTCTGGCAATGCAAGAAACTGTCAATCAGTTATTGACCATGCAAAAAGAGATGCAAAAACAAATGACAATGATGGTTGCTGTTCCAGTTACAAAAGAGGGTAGAAGGCTCGAGGCTGCCCTAGGGAGAAGCATGGAAAAAGCTGTCAAGGCCAACACGGATGCTTTGTGGGCTCGAATTCAAGAGGAGAATGCCAAAAATGAAAAATTGTTACGAGACCGTATCCAACATGTTACAGGTTTGATTAGTAATTTTATAAATAAGGATCTACCAGCAATATTGGAGAAAACAGTAAAGAAGGAAATGCCTTCAATTGGGCCTGCTGTAGTCCGTGCAATGTCTCCTGGTGTGGAGAAAATAATATCTTCTGTTATTGTGGAGTCATTCCAGAGAGGAGTGGGTGATAAGGCAGTGAATCAACTTGATAAATCAGTTAATTCAAAACTTGAAGCTACTGTAGCTAGGCAAATCCAAGCACAGTTTCAGACAACTGGCAAACAGGTGCTTCAGGATGCACTCAAATCCAGTTTTGAAACATCAGTGGTTCCTGCATTTGAGATGTCATGTAAAGCCATGTTTGAGCAAGTGGATGCTACATTTCAAAAAGGCATGGTTGAACATTCAACTGCAGTGCAGCAACGCCTTGAATCTGGGCCTACTTCATTGGCAATGACTCTAAGGGATTCCATTAATTCAGCATCATCAGTTACTCAAACGTTGAGTAGAGAAGTGCTTGAGGGTCAGAGAAAGCTAATGGCACTTGCAACTGCAAGAACAAATTCAGGCACCTTAAATCCTCTGCCCATCCAGCTGAACAACGGTCCTTTACTTCATGAAAAGGTTGAGGTGCCATTAGATCCCACAAAGGAGCTAGCAAGGTTGATTTCTGAACGTAAATATGAGGAGGCATTCACTGGAGCTCTACAAAGAAGTGATGTATCCATTGTATCTTGGTTGTGTTCTCAGGTTGATTTACATGGACTTTTGTCAATGGTTCCTCTTCCTTTAAGCCAAGGTGTAGTGCTTTCACTTCTGCAGCAGTTGGCGTGTGATATTAACAACGATCCACCCCGAAAGCTCGCGTGGATGACAGACGTGGCTACTGCCATAAATCCCTCGGACCCCATGATTGCTATGCACGTGCGACCCATCTTTGAGCAAGTCTATCAGATATTGAATCATCAACGAAGCTTGCCTACAATGAGTGGAGCTGAACTCTCGAGTATCCGTCTTTTATTGCATGTCATCAACTCTATGCTTACGACATGTAAATGA | 4143 | 0.4523 | MASPNQPPPPTFDMHSFFNPPNPNPNPNPSSPFPPSAPPPPPPSSSSSYPPPTGPFSATPFHHNFPFDHLPIHPNHHLQHRSLSFPTPPLQPQPIPPPSNPNAGARLMALLSAPPPPPTHQQPASVAPFSSDFSAVASSPLVPPSMGGALTAANAAAAALIRLPSSKVPKGRHLIGEHVVYDVDVRLPGEVQPQLEVAPITKYGSDPNPVLGRQIAVNKSYICYGLKQGNIRVLNIHTAVRSLLRGHNQRVTDLAFFAEDVHLLASVGTDGRVYVWKISEGPDDDDKPQITANIVIAVQIVVEEKVDHPQICWHCHKQEILIVGMGKHVLRIDTTKVGNSEAFVAEDPPKCPVDKLIDGVQLVGSHDGEVTDLSMCQWMTNRLVSASQDGTIKIWEDRKTQPLMILKPHDGHPVFSATFFTAPHQPDHIVLITAGPQNREVKLWVSAGDEGWLLPSDAESWRCTQTLELKSSAQPSPKDAFFNQVAALPHAGLLLLANAQRNAIYAVHLEYGPNPESTRMDYIAEFTVTMPILSFTGTSDILPHGEHVVQVYCVQTQAIQQYALDLAQCLPPPLENVGLEKSDSSVSRDTITVEGFASLDSSAGRMSEMSLASSAPKTMIQASNTESGLVARYPLSSSHIEAPISKEISSSNIEAKPVTLAPSSSDADIVCVPSPPLPLSPRLSRKLSDFRNPQSNLSDHVGDQPVNDYSVDRQMDTIHRNLSDPLNNDLKSDEKKIKQDDISSVLNHSVMFKQPTHLVTPSEIIKAGSSSETNIIDRKNEGETKIQDVVDVGNAEVEVKVVGETRSNQSDEFGRQGPQQNSVSDSKEKFFCSQASDLGIEMARECRAISGETYITEEPGQVDSIVGDSLVQPSNANEDGLQDLAKDVHEKVSDSSTSLAVPPSPAPNTKGKRQKGKNSQASGPSSPSPSACNSTDSSNEPNGNPSLPSTENAVPQILAMQETVNQLLTMQKEMQKQMTMMVAVPVTKEGRRLEAALGRSMEKAVKANTDALWARIQEENAKNEKLLRDRIQHVTGLISNFINKDLPAILEKTVKKEMPSIGPAVVRAMSPGVEKIISSVIVESFQRGVGDKAVNQLDKSVNSKLEATVARQIQAQFQTTGKQVLQDALKSSFETSVVPAFEMSCKAMFEQVDATFQKGMVEHSTAVQQRLESGPTSLAMTLRDSINSASSVTQTLSREVLEGQRKLMALATARTNSGTLNPLPIQLNNGPLLHEKVEVPLDPTKELARLISERKYEEAFTGALQRSDVSIVSWLCSQVDLHGLLSMVPLPLSQGVVLSLLQQLACDINNDPPRKLAWMTDVATAINPSDPMIAMHVRPIFEQVYQILNHQRSLPTMSGAELSSIRLLLHVINSMLTTCK. | 1381 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g02851 | 1380 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 244 | 281 | IPR001680 | GO:0005515 | |
| Seca6g02851 | 1380 | MobiDBLite | consensus disorder prediction | 804 | 827 | - | - | |
| Seca6g02851 | 1380 | PANTHER | ENHANCER OF MRNA-DECAPPING PROTEIN 4 | 1 | 1378 | IPR045152 | GO:0031087 | |
| Seca6g02851 | 1380 | MobiDBLite | consensus disorder prediction | 1 | 96 | - | - | |
| Seca6g02851 | 1380 | FunFam | Enhancer of mRNA-decapping protein 4 | 1292 | 1378 | - | - | |
| Seca6g02851 | 1380 | Gene3D | - | 299 | 510 | IPR015943 | GO:0005515 | |
| Seca6g02851 | 1380 | SUPERFAMILY | WD40 repeat-like | 210 | 509 | IPR036322 | GO:0005515 | |
| Seca6g02851 | 1380 | Pfam | WD40 region of Ge1, enhancer of mRNA-decapping protein | 197 | 509 | IPR032401 | - | |
| Seca6g02851 | 1380 | FunFam | enhancer of mRNA-decapping protein 4 | 196 | 510 | - | - | |
| Seca6g02851 | 1380 | Gene3D | - | 179 | 297 | IPR015943 | GO:0005515 | |
| Seca6g02851 | 1380 | Gene3D | - | 1292 | 1380 | IPR044938 | - | |
| Seca6g02851 | 1380 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 363 | 405 | IPR001680 | GO:0005515 | |
| Seca6g02851 | 1380 | MobiDBLite | consensus disorder prediction | 911 | 951 | - | - | |
| Seca6g02851 | 1380 | MobiDBLite | consensus disorder prediction | 888 | 951 | - | - | |
| Seca6g02851 | 1380 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 363 | 396 | - | - | |
| Seca6g02851 | 1380 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 244 | 281 | - | - | |
| Seca6g02851 | 1380 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| Seca6g02851 | 1380 | SMART | WD40_4 | 359 | 396 | IPR001680 | GO:0005515 | |
| Seca6g02851 | 1380 | SMART | WD40_4 | 237 | 277 | IPR001680 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g02851 | Seca-Chr6 | 93780964 | 93792466 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g02851 | K12616 | - | gmx:100798228 | 2151.33 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Seca6g02851 | 6 | 93780964 | 93792466 | Seca6g02851 | 6 | 93780964 | 93792466 | ECH |